Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006489A_C01 KMC006489A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL02122.1| copper-transporting P-type ATPase [Brassica napus] 99 5e-36
ref|NP_199292.1| ATP dependent copper transporter; protein id: A... 98 7e-36
gb|AAK56262.1|AF367273_1 AT5g44790/K23L20_14 [Arabidopsis thaliana] 98 7e-36
pir||B96660 protein F2K11.18 [imported] - Arabidopsis thaliana g... 79 6e-30
ref|NP_176533.1| ATP dependent copper transporter, putative; pro... 79 6e-30
>gb|AAL02122.1| copper-transporting P-type ATPase [Brassica napus]
Length = 999
Score = 98.6 bits (244), Expect(2) = 5e-36
Identities = 45/62 (72%), Positives = 55/62 (88%)
Frame = -3
Query: 460 AYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVLEIL 281
AYNVV+IP+AAGV +P L ++LPPW +GACMALSSVSVVCSSLLL+RY++PRLT +LEI
Sbjct: 938 AYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTILEIT 997
Query: 280 VE 275
E
Sbjct: 998 KE 999
Score = 74.3 bits (181), Expect(2) = 5e-36
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2
Query: 584 DVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAM 462
DVAIEAA++VLMRNNLEDVITAIDLSRKT +RIRLNYVFAM
Sbjct: 897 DVAIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAM 937
>ref|NP_199292.1| ATP dependent copper transporter; protein id: At5g44790.1, supported
by cDNA: gi_14194134, supported by cDNA: gi_4760369
[Arabidopsis thaliana] gi|12229667|sp|Q9S7J8|AHM5_ARATH
Copper-transporting ATPase RAN1 (Responsive-to-antagonist
1) gi|4760370|gb|AAD29109.1|AF082565_1 ATP dependent
copper transporter [Arabidopsis thaliana]
gi|4760380|gb|AAD29115.1| ATP dependent copper
transporter [Arabidopsis thaliana]
gi|6850337|gb|AAC79141.2| ATP dependent copper
transporter (RAN1) [Arabidopsis thaliana]
gi|9758383|dbj|BAB08832.1| ATP dependent copper
transporter [Arabidopsis thaliana]
Length = 1001
Score = 98.2 bits (243), Expect(2) = 7e-36
Identities = 45/62 (72%), Positives = 55/62 (88%)
Frame = -3
Query: 460 AYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVLEIL 281
AYNVV+IP+AAGV +P L ++LPPW +GACMALSSVSVVCSSLLL+RY++PRLT VL+I
Sbjct: 940 AYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTVLKIT 999
Query: 280 VE 275
E
Sbjct: 1000 TE 1001
Score = 74.3 bits (181), Expect(2) = 7e-36
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2
Query: 584 DVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAM 462
DVAIEAA++VLMRNNLEDVITAIDLSRKT +RIRLNYVFAM
Sbjct: 899 DVAIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAM 939
>gb|AAK56262.1|AF367273_1 AT5g44790/K23L20_14 [Arabidopsis thaliana]
Length = 1001
Score = 98.2 bits (243), Expect(2) = 7e-36
Identities = 45/62 (72%), Positives = 55/62 (88%)
Frame = -3
Query: 460 AYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVLEIL 281
AYNVV+IP+AAGV +P L ++LPPW +GACMALSSVSVVCSSLLL+RY++PRLT VL+I
Sbjct: 940 AYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTVLKIT 999
Query: 280 VE 275
E
Sbjct: 1000 TE 1001
Score = 74.3 bits (181), Expect(2) = 7e-36
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -2
Query: 584 DVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAM 462
DVAIEAA++VLMRNNLEDVITAIDLSRKT +RIRLNYVFAM
Sbjct: 899 DVAIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAM 939
>pir||B96660 protein F2K11.18 [imported] - Arabidopsis thaliana
gi|6633848|gb|AAF19707.1|AC008047_14 F2K11.18
[Arabidopsis thaliana]
Length = 1191
Score = 79.3 bits (194), Expect(2) = 6e-30
Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Frame = -3
Query: 463 WA--YNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVL 290
WA YN++ IP+AAGVL+P +LPPW++GA MA SSVSVVC SLLLK Y+RP+ L
Sbjct: 938 WALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCCSLLLKNYKRPKKLDHL 997
Query: 289 EI 284
EI
Sbjct: 998 EI 999
Score = 73.2 bits (178), Expect(2) = 6e-30
Identities = 36/47 (76%), Positives = 42/47 (88%)
Frame = -2
Query: 584 DVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMGLQRCG 444
D+AIEAA+ VLM++NLEDVITAIDLSRKTFSRIRLNYV+A+G G
Sbjct: 900 DIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMG 946
>ref|NP_176533.1| ATP dependent copper transporter, putative; protein id: At1g63440.1
[Arabidopsis thaliana] gi|12229670|sp|Q9SH30|AHM7_ARATH
Potential copper-transporting ATPase 3
Length = 995
Score = 79.3 bits (194), Expect(2) = 6e-30
Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Frame = -3
Query: 463 WA--YNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVL 290
WA YN++ IP+AAGVL+P +LPPW++GA MA SSVSVVC SLLLK Y+RP+ L
Sbjct: 926 WALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCCSLLLKNYKRPKKLDHL 985
Query: 289 EI 284
EI
Sbjct: 986 EI 987
Score = 73.2 bits (178), Expect(2) = 6e-30
Identities = 36/47 (76%), Positives = 42/47 (88%)
Frame = -2
Query: 584 DVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMGLQRCG 444
D+AIEAA+ VLM++NLEDVITAIDLSRKTFSRIRLNYV+A+G G
Sbjct: 888 DIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMG 934
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,826,538
Number of Sequences: 1393205
Number of extensions: 10431035
Number of successful extensions: 22431
Number of sequences better than 10.0: 342
Number of HSP's better than 10.0 without gapping: 21670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22369
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
