Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006488A_C01 KMC006488A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175274.1| leaf development protein Argonaute; protein id:... 430 e-119
gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana] 421 e-117
ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation... 418 e-116
pir||T52134 Zwille protein [imported] - Arabidopsis thaliana gi|... 416 e-115
dbj|BAB96813.1| ZLL/PNH homologous protein [Oryza sativa (japoni... 413 e-114
>ref|NP_175274.1| leaf development protein Argonaute; protein id: At1g48410.1,
supported by cDNA: gi_2149639 [Arabidopsis thaliana]
gi|11386626|sp|O04379|AGO1_ARATH Argonaute protein
gi|2149640|gb|AAC18440.1| Argonaute protein [Arabidopsis
thaliana] gi|5733867|gb|AAD49755.1|AC007932_3 Identical
to Argonaute protein from Arabidopsis thaliana gb|U91995.
EST gb|AA720232 comes from this gene
gi|24030354|gb|AAN41341.1| putative leaf development
protein Argonaute [Arabidopsis thaliana]
Length = 1048
Score = 430 bits (1105), Expect = e-119
Identities = 209/232 (90%), Positives = 223/232 (96%)
Frame = +1
Query: 1 LDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGG 180
+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQY+ANVALKINVKVGG
Sbjct: 674 IDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGG 733
Query: 181 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLV 360
RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQD+PEITKYAGLV
Sbjct: 734 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLV 793
Query: 361 CAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQF 540
CAQAHRQELIQDLFK+W+DP +G +TGGMIKELLI+FRR+TG KP RIIFYRDGVSEGQF
Sbjct: 794 CAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRDGVSEGQF 853
Query: 541 YQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFGSNHHDKSSVDR 696
YQVLL+ELDAIRKACASLE YQPPVTFVVVQKRHHTRLF NH+D+ SVDR
Sbjct: 854 YQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDR 905
>gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana]
Length = 1123
Score = 421 bits (1082), Expect = e-117
Identities = 209/244 (85%), Positives = 223/244 (90%), Gaps = 12/244 (4%)
Frame = +1
Query: 1 LDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGG 180
+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQY+ANVALKINVKVGG
Sbjct: 734 IDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGG 793
Query: 181 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLV 360
RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQD+PEITKYAGLV
Sbjct: 794 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLV 853
Query: 361 CAQAHRQELIQDLFKQWQDPVRGTLTGGMIK------------ELLISFRRATGQKPQRI 504
CAQAHRQELIQDLFK+W+DP +G +TGGMIK ELLI+FRR+TG KP RI
Sbjct: 854 CAQAHRQELIQDLFKEWKDPQKGVVTGGMIKYVWMLFNIFVIGELLIAFRRSTGHKPLRI 913
Query: 505 IFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFGSNHHDKS 684
IFYRDGVSEGQFYQVLL+ELDAIRKACASLE YQPPVTFVVVQKRHHTRLF NH+D+
Sbjct: 914 IFYRDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRH 973
Query: 685 SVDR 696
SVDR
Sbjct: 974 SVDR 977
>ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation factor; protein id:
At5g43810.1 [Arabidopsis thaliana]
gi|12643935|sp|Q9XGW1|PINH_ARATH PINHEAD protein (ZWILLE
protein) gi|5107374|gb|AAD40098.1|AF154272_1 PINHEAD
[Arabidopsis thaliana] gi|10177951|dbj|BAB11310.1|
PINHEAD [Arabidopsis thaliana]
Length = 988
Score = 418 bits (1074), Expect = e-116
Identities = 201/232 (86%), Positives = 222/232 (95%)
Frame = +1
Query: 1 LDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGG 180
L+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVFK+SKQYLANV+LKINVK+GG
Sbjct: 623 LELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKISKQYLANVSLKINVKMGG 682
Query: 181 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLV 360
RNTVLVDA+S RIPLVSD PTIIFGADVTHP GE+SSPSIAAVVASQD+PE+TKYAGLV
Sbjct: 683 RNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLV 742
Query: 361 CAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQF 540
CAQAHRQELIQDL+K WQDPVRGT++GGMI++LLISFR+ATGQKP RIIFYRDGVSEGQF
Sbjct: 743 CAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQF 802
Query: 541 YQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFGSNHHDKSSVDR 696
YQVLL+ELDAIRKACASLEPNYQPPVTF+VVQKRHHTRLF +NH DK+S DR
Sbjct: 803 YQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKNSTDR 854
>pir||T52134 Zwille protein [imported] - Arabidopsis thaliana
gi|2959781|emb|CAA11429.1| Zwille protein [Arabidopsis
thaliana]
Length = 988
Score = 416 bits (1069), Expect = e-115
Identities = 200/232 (86%), Positives = 222/232 (95%)
Frame = +1
Query: 1 LDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGG 180
L+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVFK+SKQYLA+V+LKINVK+GG
Sbjct: 623 LELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKISKQYLADVSLKINVKMGG 682
Query: 181 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLV 360
RNTVLVDA+S RIPLVSD PTIIFGADVTHP GE+SSPSIAAVVASQD+PE+TKYAGLV
Sbjct: 683 RNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLV 742
Query: 361 CAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQF 540
CAQAHRQELIQDL+K WQDPVRGT++GGMI++LLISFR+ATGQKP RIIFYRDGVSEGQF
Sbjct: 743 CAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQF 802
Query: 541 YQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFGSNHHDKSSVDR 696
YQVLL+ELDAIRKACASLEPNYQPPVTF+VVQKRHHTRLF +NH DK+S DR
Sbjct: 803 YQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKNSTDR 854
>dbj|BAB96813.1| ZLL/PNH homologous protein [Oryza sativa (japonica cultivar-group)]
Length = 978
Score = 413 bits (1062), Expect = e-114
Identities = 200/232 (86%), Positives = 219/232 (94%)
Frame = +1
Query: 1 LDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGG 180
L+LL+ ILPDNNGSLYGD+KRICETDLGL+SQCCLTKHVFK+SKQYLANV+LKINVK+GG
Sbjct: 617 LELLLAILPDNNGSLYGDIKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGG 676
Query: 181 RNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLV 360
RNTVL+DA+S RIPLVSD PTIIFGADVTHP GEDSSPSIAAVVASQD+PE+TKYAGLV
Sbjct: 677 RNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLV 736
Query: 361 CAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQF 540
CAQAHRQELIQDL+K W DP RGT+TGGMI+ELLISFR+ATGQKP RIIFYRDGVSEGQF
Sbjct: 737 CAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVSEGQF 796
Query: 541 YQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFGSNHHDKSSVDR 696
YQVLL+ELDAIRKACASLEP YQPPVTFVVVQKRHHTRLF +NH D+SS D+
Sbjct: 797 YQVLLYELDAIRKACASLEPIYQPPVTFVVVQKRHHTRLFANNHKDRSSTDK 848
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,326,336
Number of Sequences: 1393205
Number of extensions: 13637371
Number of successful extensions: 49602
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 47518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49050
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
