Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006475A_C01 KMC006475A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_228769.1| similar to LIM-only protein 6 (Triple LIM domai... 42 0.007
dbj|BAC29758.1| unnamed protein product [Mus musculus] 36 0.50
gb|AAH23671.1| Unknown (protein for IMAGE:5039859) [Mus musculus] 34 1.5
gb|AAH49258.1| similar to LIM domain only 6 [Mus musculus] 34 1.5
ref|NP_780306.1| LIM domain only 6; LIM only 6 [Mus musculus] gi... 34 1.5
>ref|XP_228769.1| similar to LIM-only protein 6 (Triple LIM domain protein 6) [Rattus
norvegicus]
Length = 666
Score = 42.0 bits (97), Expect = 0.007
Identities = 19/44 (43%), Positives = 22/44 (49%)
Frame = -1
Query: 579 RSSSPSPRDATAGHHHHRLRRAKAPRGEAKE*KEASRRGKQRCD 448
R SP PR + HHHHR RR + RG + R G RCD
Sbjct: 543 RPRSPPPRAPSCYHHHHRRRRRRRRRGSHQHHHHPGRHGHHRCD 586
>dbj|BAC29758.1| unnamed protein product [Mus musculus]
Length = 624
Score = 35.8 bits (81), Expect = 0.50
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 579 RSSSPSPRDATAGHHHH--RLRRAKAPRGEAKE*KEASRRGKQRCD 448
R SP PR + HHHH R RR RG R G RCD
Sbjct: 499 RPRSPPPRTPSCHHHHHHRRRRRRHRRRGSHHHHHHPGRHGHHRCD 544
>gb|AAH23671.1| Unknown (protein for IMAGE:5039859) [Mus musculus]
Length = 649
Score = 34.3 bits (77), Expect = 1.5
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 579 RSSSPSPRDATAGHHHH--RLRRAKAPRGEAKE*KEASRRGKQRCD 448
R SP PR + HHHH R R+ RG R G RCD
Sbjct: 524 RPRSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGHHRCD 569
>gb|AAH49258.1| similar to LIM domain only 6 [Mus musculus]
Length = 624
Score = 34.3 bits (77), Expect = 1.5
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 579 RSSSPSPRDATAGHHHH--RLRRAKAPRGEAKE*KEASRRGKQRCD 448
R SP PR + HHHH R R+ RG R G RCD
Sbjct: 499 RPRSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGHHRCD 544
>ref|NP_780306.1| LIM domain only 6; LIM only 6 [Mus musculus]
gi|26350723|dbj|BAC38998.1| unnamed protein product [Mus
musculus]
Length = 556
Score = 34.3 bits (77), Expect = 1.5
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 579 RSSSPSPRDATAGHHHH--RLRRAKAPRGEAKE*KEASRRGKQRCD 448
R SP PR + HHHH R R+ RG R G RCD
Sbjct: 431 RPRSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGHHRCD 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,350,226
Number of Sequences: 1393205
Number of extensions: 13789175
Number of successful extensions: 48650
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 43459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47994
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
