Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006474A_C01 KMC006474A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43411.1| unknown protein [Arabidopsis thaliana] gi|289734... 80 1e-14
ref|NP_488548.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 62 5e-09
ref|NP_442291.1| hypothetical protein [Synechocystis sp. PCC 680... 61 1e-08
ref|ZP_00072807.1| hypothetical protein [Trichodesmium erythraeu... 60 2e-08
ref|ZP_00115571.1| hypothetical protein [Synechococcus sp. WH 8102] 51 9e-06
>dbj|BAC43411.1| unknown protein [Arabidopsis thaliana] gi|28973427|gb|AAO64038.1|
unknown protein [Arabidopsis thaliana]
Length = 193
Score = 80.5 bits (197), Expect = 1e-14
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = -1
Query: 568 AFCACTWHFFYNDESLEVLVALQAALTLVGNATMCIAAYRIYKSS 434
A CACTWHFFYNDESLEVLVALQAALT+ GN T+CIAA+RI K S
Sbjct: 140 ALCACTWHFFYNDESLEVLVALQAALTVFGNITLCIAAFRINKLS 184
>ref|NP_488548.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25354814|pir||AD2369
hypothetical protein all4508 [imported] - Nostoc sp.
(strain PCC 7120) gi|17133644|dbj|BAB76207.1|
ORF_ID:all4508~hypothetical protein [Nostoc sp. PCC
7120]
Length = 102
Score = 62.0 bits (149), Expect = 5e-09
Identities = 27/46 (58%), Positives = 36/46 (77%)
Frame = -1
Query: 568 AFCACTWHFFYNDESLEVLVALQAALTLVGNATMCIAAYRIYKSSR 431
A CACTWH+F N ESLE +V LQA +TLVGN T+ AA+ I++S++
Sbjct: 52 AMCACTWHYFDNSESLEWIVTLQATMTLVGNFTLLAAAWLIWRSAK 97
>ref|NP_442291.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|6136533|sp|Q55720|Y49L_SYNY3 Ycf49-like protein
gi|7469614|pir||S76515 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
gi|1001630|dbj|BAA10361.1| ORF_ID:sll0608~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 104
Score = 60.8 bits (146), Expect = 1e-08
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = -1
Query: 568 AFCACTWHFFYNDESLEVLVALQAALTLVGNATMCIAAYRIYKSSRE 428
A CACTWHFF N L+ LV LQA T++GN T+C+AA+ IY+ S +
Sbjct: 52 ATCACTWHFFDNASQLDWLVTLQALTTVIGNITLCLAAWWIYRQSAQ 98
>ref|ZP_00072807.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 105
Score = 60.1 bits (144), Expect = 2e-08
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = -1
Query: 568 AFCACTWHFFYNDESLEVLVALQAALTLVGNATMCIAAYRIYKSSRE 428
A CACTWH+F ND +LE LV LQA++TL+GN T+ AA+ I+ S++
Sbjct: 52 AMCACTWHYFDNDPNLEWLVTLQASMTLLGNFTLLAAAWWIFSESKK 98
>ref|ZP_00115571.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 92
Score = 51.2 bits (121), Expect = 9e-06
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = -1
Query: 568 AFCACTWHFFYNDESLEVLVALQAALTLVGNATMCIAAYRIYKSSRES 425
A ACTWH F N E+L LV LQAALTL+GN + AA+ + + S
Sbjct: 45 AMAACTWHLFDNSEALRPLVTLQAALTLIGNMVLAWAAWSLLQRRETS 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,217,294
Number of Sequences: 1393205
Number of extensions: 9248069
Number of successful extensions: 17745
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17730
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
