Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006470A_C01 KMC006470A_c01
(847 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; ... 155 7e-37
ref|NP_566800.1| transport inhibitor response 1 (TIR1), putative... 152 6e-36
ref|NP_563915.1| transport inhibitor response 1 (TIR1), putative... 151 1e-35
gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana] 144 2e-33
ref|NP_567255.1| F-box protein GRR1-like protein 1, AtFBL18; pro... 144 2e-33
>ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; protein id:
At3g62980.1, supported by cDNA: gi_11935208, supported
by cDNA: gi_2352493 [Arabidopsis thaliana]
gi|11282337|pir||T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana
gi|2352492|gb|AAB69175.1| transport inhibitor response 1
[Arabidopsis thaliana] gi|2352494|gb|AAB69176.1|
transport inhibitor response 1 [Arabidopsis thaliana]
gi|7573427|emb|CAB87743.1| transport inhibitor response
1 (TIR1) [Arabidopsis thaliana]
gi|25054937|gb|AAN71945.1| putative transport inhibitor
response TIR1, AtFBL1 protein [Arabidopsis thaliana]
Length = 594
Score = 155 bits (392), Expect = 7e-37
Identities = 71/121 (58%), Positives = 86/121 (70%)
Frame = +2
Query: 482 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRF 661
A FP+EVLE V ++ KDR+SVSLVCK WY ERW RR VFIGNCY+VSP + RRF
Sbjct: 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65
Query: 662 PNIRSVTLKGKPRFSDFNLVPANWGADIRSWLVVFADKYPLLEELRLKRMTVSDESLEFL 841
P +RSV LKGKP F+DFNLVP WG + W+ + Y LEE+RLKRM V+D+ LE +
Sbjct: 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125
Query: 842 A 844
A
Sbjct: 126 A 126
>ref|NP_566800.1| transport inhibitor response 1 (TIR1), putative; protein id:
At3g26810.1, supported by cDNA: gi_17064983 [Arabidopsis
thaliana] gi|9279671|dbj|BAB01228.1| transport inhibitor
response-like protein [Arabidopsis thaliana]
gi|17064984|gb|AAL32646.1| transport inhibitor
response-like protein [Arabidopsis thaliana]
Length = 575
Score = 152 bits (384), Expect = 6e-36
Identities = 71/118 (60%), Positives = 88/118 (74%)
Frame = +2
Query: 491 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRFPNI 670
FPDEV+E V V S KDR+++SLVCK WY ER+SR+ VFIGNCY+++PE L RRFP +
Sbjct: 4 FPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCL 63
Query: 671 RSVTLKGKPRFSDFNLVPANWGADIRSWLVVFADKYPLLEELRLKRMTVSDESLEFLA 844
+S+TLKGKP F+DFNLVP WG + W+ A LEELRLKRM V+DESLE L+
Sbjct: 64 KSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLELLS 121
>ref|NP_563915.1| transport inhibitor response 1 (TIR1), putative; protein id:
At1g12820.1, supported by cDNA: gi_20466150 [Arabidopsis
thaliana] gi|25352269|pir||F86261 F13K23.7 protein -
Arabidopsis thaliana gi|8698729|gb|AAF78487.1|AC012187_7
Strong similarity to transport inhibitor response 1
(TIR1) from Arabidopsis thaliana gb|AF005047
gi|20466151|gb|AAM20393.1| transport inhibitor response
1, putative [Arabidopsis thaliana]
gi|25083863|gb|AAN72129.1| transport inhibitor response
1, putative [Arabidopsis thaliana]
Length = 577
Score = 151 bits (381), Expect = 1e-35
Identities = 70/118 (59%), Positives = 88/118 (74%)
Frame = +2
Query: 491 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRFPNI 670
FPDEV+E V V S KDR+S+SLVCK W+ ER+SR+ VFIGNCY+++PE L RRFP +
Sbjct: 4 FPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCL 63
Query: 671 RSVTLKGKPRFSDFNLVPANWGADIRSWLVVFADKYPLLEELRLKRMTVSDESLEFLA 844
+S+TLKGKP F+DFNLVP WG + W+ A LEELRLKRM V+DESL+ L+
Sbjct: 64 KSLTLKGKPHFADFNLVPHEWGGFVHPWIEALARSRVGLEELRLKRMVVTDESLDLLS 121
>gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana]
Length = 585
Score = 144 bits (363), Expect = 2e-33
Identities = 66/118 (55%), Positives = 86/118 (71%)
Frame = +2
Query: 491 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRFPNI 670
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRRFP +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 671 RSVTLKGKPRFSDFNLVPANWGADIRSWLVVFADKYPLLEELRLKRMTVSDESLEFLA 844
RS+TLKGKP F+D+NLVP WG W+ A K LEE+R+KRM V+DE LE +A
Sbjct: 65 RSLTLKGKPHFADYNLVPDGWGGYAWPWIEAMAAKSSSLEEIRMKRMVVTDECLEKIA 122
>ref|NP_567255.1| F-box protein GRR1-like protein 1, AtFBL18; protein id:
At4g03190.1, supported by cDNA: gi_12658969, supported
by cDNA: gi_15027884 [Arabidopsis thaliana]
gi|25352265|pir||E85040 hypothetical protein AT4g03190
[imported] - Arabidopsis thaliana
gi|4262147|gb|AAD14447.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|7270189|emb|CAB77804.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|23297438|gb|AAN12969.1| putative F-box protein
AtFBL18 [Arabidopsis thaliana]
Length = 585
Score = 144 bits (363), Expect = 2e-33
Identities = 66/118 (55%), Positives = 86/118 (71%)
Frame = +2
Query: 491 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRFPNI 670
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRRFP +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 671 RSVTLKGKPRFSDFNLVPANWGADIRSWLVVFADKYPLLEELRLKRMTVSDESLEFLA 844
RS+TLKGKP F+D+NLVP WG W+ A K LEE+R+KRM V+DE LE +A
Sbjct: 65 RSLTLKGKPHFADYNLVPDGWGGYAWPWIEAMAAKSSSLEEIRMKRMVVTDECLEKIA 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,832,591
Number of Sequences: 1393205
Number of extensions: 15225178
Number of successful extensions: 47569
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47501
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
