Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006467A_C01 KMC006467A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174562.1| hypothetical protein; protein id: At1g32850.1 [... 55 5e-07
ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arab... 53 3e-06
ref|NP_567363.1| putative protein; protein id: At4g10590.1, supp... 52 4e-06
pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana ... 52 4e-06
gb|AAD03433.1| contains similarity to ubiquitin carboxyl-termina... 51 1e-05
>ref|NP_174562.1| hypothetical protein; protein id: At1g32850.1 [Arabidopsis
thaliana] gi|25403162|pir||C86453 CDS protein F9L11.5
[imported] - Arabidopsis thaliana
gi|6910582|gb|AAF31287.1|AC006424_16 CDS [Arabidopsis
thaliana]
Length = 887
Score = 55.5 bits (132), Expect = 5e-07
Identities = 29/62 (46%), Positives = 36/62 (57%), Gaps = 10/62 (16%)
Frame = -3
Query: 513 SYIHSKYAYPTVFISVQYGH----------EKWYEFDDPRVAPANEDEIKTSAAYVLFYR 364
SY++ YA + + GH KWY FDD RV+ NE EIKTSAAYVLFY+
Sbjct: 814 SYLYELYAISNHYGGLGGGHYTAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQ 873
Query: 363 KV 358
+V
Sbjct: 874 RV 875
>ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arabidopsis thaliana]
gi|7487639|pir||T04192 hypothetical protein T4F9.30 -
Arabidopsis thaliana gi|4539435|emb|CAB40023.1| putative
protein [Arabidopsis thaliana] gi|7267754|emb|CAB78180.1|
putative protein [Arabidopsis thaliana]
Length = 928
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Frame = -3
Query: 513 SYIHSKYAYPTVFISVQYGH----------EKWYEFDDPRVAPANEDEIKTSAAYVLFYR 364
SY++ YA + + GH KWY FDD V+ NE EI+ SAAYVLFYR
Sbjct: 839 SYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYR 898
Query: 363 KV*MKT 346
+V +T
Sbjct: 899 RVRSET 904
>ref|NP_567363.1| putative protein; protein id: At4g10590.1, supported by cDNA:
gi_15450766 [Arabidopsis thaliana]
gi|15450767|gb|AAK96655.1| putative protein [Arabidopsis
thaliana]
Length = 910
Score = 52.4 bits (124), Expect = 4e-06
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Frame = -3
Query: 513 SYIHSKYAYPTVFISVQYGH----------EKWYEFDDPRVAPANEDEIKTSAAYVLFYR 364
SY++ YA + + GH +WY FDD V+ NE EIK SAAYVLFYR
Sbjct: 833 SYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYR 892
Query: 363 KV*MKT 346
+V +T
Sbjct: 893 RVRSET 898
>pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana
gi|4539437|emb|CAB40025.1| putative protein [Arabidopsis
thaliana] gi|7267756|emb|CAB78182.1| putative protein
[Arabidopsis thaliana]
Length = 937
Score = 52.4 bits (124), Expect = 4e-06
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Frame = -3
Query: 513 SYIHSKYAYPTVFISVQYGH----------EKWYEFDDPRVAPANEDEIKTSAAYVLFYR 364
SY++ YA + + GH +WY FDD V+ NE EIK SAAYVLFYR
Sbjct: 860 SYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYR 919
Query: 363 KV*MKT 346
+V +T
Sbjct: 920 RVRSET 925
>gb|AAD03433.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family 2
(Pfam:PF00443, score=48.3, E=3.5e-13, N=2) and
(Pfam:PF00442, Score=40.0 E=5.2e-08, N=1) [Arabidopsis
thaliana]
Length = 1028
Score = 50.8 bits (120), Expect = 1e-05
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = -3
Query: 489 YPTVFISVQYGHEKWYEFDDPRVAPANEDEIKTSAAYVLFYRKV*MKT 346
Y ++F+ + KWY FDD V+ NE EI+ SAAYVLFYR+V +T
Sbjct: 917 YVSIFMQL-IDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRVRSET 963
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,590,159
Number of Sequences: 1393205
Number of extensions: 9857326
Number of successful extensions: 20723
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 20257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20706
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
