Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006457A_C01 KMC006457A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700690.1| pre-mRNA splicing factor, putative [Plasmodium ... 34 1.4
gb|ZP_00098752.1| hypothetical protein [Desulfitobacterium hafni... 33 3.2
gb|AAC41268.1| zygotic DNA replication factor MCM6a [Xenopus lae... 33 3.2
gb|EAA16265.1| hypothetical protein [Plasmodium yoelii yoelii] 33 4.1
gb|AAL25125.1|AF431889_1 type IIs modification methyltransferase... 33 4.1
>ref|NP_700690.1| pre-mRNA splicing factor, putative [Plasmodium falciparum 3D7]
gi|23495082|gb|AAN35414.1|AE014832_36 pre-mRNA splicing
factor, putative [Plasmodium falciparum 3D7]
Length = 538
Score = 34.3 bits (77), Expect = 1.4
Identities = 25/90 (27%), Positives = 39/90 (42%)
Frame = -3
Query: 584 NLNEDDNDHIESQFPEVPTYDNTQGARPMGHDASGSRGGRRGGKKAKQNDDISESLANSM 405
N + N+ ES + N+ R G SG +G R QNDD+S S ++
Sbjct: 228 NSSNKRNNKYESHSQSLSDNRNSYRNRSKGKKRSGYKGKRSYSSYENQNDDVSRSRSDHG 287
Query: 404 SKFGEFYAGTVENINRLTSCFLPEKETADR 315
S+ G+ +N N +S L + +A R
Sbjct: 288 SRSGDRSYRKKKNKNESSSDVLSKHSSAYR 317
>gb|ZP_00098752.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 1165
Score = 33.1 bits (74), Expect = 3.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 51 NLIKTCPSKNEI*ILSTHKINKYKANKFKHHCYSKHSAR-------IPPSFRVYQQKKKK 209
NL +TCP +E + K+N+ K +HH YS +R + P QQ+K +
Sbjct: 484 NLEETCPGDSETLVTLQEKLNQVKEQWARHHEYSAAISRSEAGIRDLLPKLDTAQQQKAQ 543
Query: 210 AVAQIT 227
+IT
Sbjct: 544 LTQKIT 549
>gb|AAC41268.1| zygotic DNA replication factor MCM6a [Xenopus laevis]
Length = 161
Score = 33.1 bits (74), Expect = 3.2
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 1/106 (0%)
Frame = -3
Query: 593 PEVNLNEDDNDHIESQFPEVPTYDNTQGARPMGHDASGSRGGRRGGKKAKQNDDISESLA 414
P+VNL++DD PE T + T G + + +G G G + SL
Sbjct: 1 PDVNLDQDDEHE-----PEDETQEGTNGDAEVPNGVNGHVNGINGHSQESNAAAAKPSLR 55
Query: 413 NSMSKFGEFYAGTVENINRLTSCFLPEKETADRRTQVYS-MLREIE 279
+ +++ V+ + ++ E ET+ RR+++ + L+EIE
Sbjct: 56 LNFAEYKRISNLLVQQLRKMED----EDETSQRRSELMNWYLKEIE 97
>gb|EAA16265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 237
Score = 32.7 bits (73), Expect = 4.1
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +1
Query: 124 LTNSNTIVIQNIAHEFLLHFECINRK------KKKQSLRLLLLVINIAAFITSALDNPSI 285
LT+SN ++NI H + C+ + KK++L L+LL+ NI I +++P+I
Sbjct: 94 LTSSNLDELKNIVHNIFIELNCVLNQNNPYLFNKKRNLTLILLLKNICQII--FINDPNI 151
Query: 286 SL 291
L
Sbjct: 152 LL 153
>gb|AAL25125.1|AF431889_1 type IIs modification methyltransferase M.AlwI [Acinetobacter
lwoffii]
Length = 608
Score = 32.7 bits (73), Expect = 4.1
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Frame = +1
Query: 106 KLTNIKLTNSNTIVIQNIAHEFLL-------HFECINRKKKKQSLRLLLLVINIAAFITS 264
K +++ LTNSN +++N+ H F H C ++ +K + + I++
Sbjct: 202 KGSHVFLTNSNHSIVENLYHGFKYEVIQTKRHISCDSKTRKGEDV-----------IISN 250
Query: 265 ALDNPSISLNIE*T*VLRSAVS------FSGKKQDVSRLIFSTVPA*NSPNLLIEL 414
N SLN+E L + + G KQ + I V NSP +L++L
Sbjct: 251 TQKNEKFSLNLEKIATLPEKIKLYPSTRYMGSKQKLLPYILGVVEQFNSP-ILVDL 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,413,312
Number of Sequences: 1393205
Number of extensions: 9454577
Number of successful extensions: 33418
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 32082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33334
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
