Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006433A_C01 KMC006433A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188555.1| dem-like protein; protein id: At3g19240.1 [Arab... 146 1e-34
pir||T07737 dem protein - tomato gi|2190419|emb|CAA73973.1| dem ... 142 2e-33
ref|NP_195066.1| Dem -like protein; protein id: At4g33400.1, sup... 139 2e-32
sp|P40781|CYP4_CYNCA CYPRO4 PROTEIN gi|322804|pir||S28592 cypro4... 130 7e-30
ref|NP_810623.1| conserved hypothetical protein [Bacteroides the... 32 6.0
>ref|NP_188555.1| dem-like protein; protein id: At3g19240.1 [Arabidopsis thaliana]
gi|9294626|dbj|BAB02965.1| dem protein [Arabidopsis
thaliana]
Length = 648
Score = 146 bits (369), Expect = 1e-34
Identities = 71/82 (86%), Positives = 77/82 (93%), Gaps = 2/82 (2%)
Frame = -1
Query: 528 TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDNFAVS--DS 355
TVGKFSVIWD ++VKNSAHECYRNQQGLKSCYCYKI+LKDESIVESRFMHDNF+ S S
Sbjct: 566 TVGKFSVIWDLERVKNSAHECYRNQQGLKSCYCYKILLKDESIVESRFMHDNFSFSGNKS 625
Query: 354 PEAPLVVATPMKVSSISMSGKR 289
PEAPLVVATP+KVSSIS+SGKR
Sbjct: 626 PEAPLVVATPLKVSSISLSGKR 647
>pir||T07737 dem protein - tomato gi|2190419|emb|CAA73973.1| dem [Lycopersicon
esculentum]
Length = 644
Score = 142 bits (359), Expect = 2e-33
Identities = 66/80 (82%), Positives = 75/80 (93%)
Frame = -1
Query: 528 TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDNFAVSDSPE 349
TVGKFSVIW+FQQVK+ +HECY+NQ GLKSCYCYKIVL+D+SIVESRFMHD +AVSDSPE
Sbjct: 562 TVGKFSVIWNFQQVKDGSHECYQNQVGLKSCYCYKIVLRDDSIVESRFMHDKYAVSDSPE 621
Query: 348 APLVVATPMKVSSISMSGKR 289
APLVVATPMKVSS S+S +R
Sbjct: 622 APLVVATPMKVSSFSISSRR 641
>ref|NP_195066.1| Dem -like protein; protein id: At4g33400.1, supported by cDNA:
gi_20465422 [Arabidopsis thaliana]
gi|7485653|pir||T05991 hypothetical protein F17M5.160 -
Arabidopsis thaliana gi|4490307|emb|CAB38798.1| Dem-like
protein [Arabidopsis thaliana]
gi|7270288|emb|CAB80057.1| Dem-like protein [Arabidopsis
thaliana] gi|20465423|gb|AAM20135.1| putative Dem
protein [Arabidopsis thaliana]
gi|28394003|gb|AAO42409.1| putative Dem protein
[Arabidopsis thaliana]
Length = 645
Score = 139 bits (350), Expect = 2e-32
Identities = 63/80 (78%), Positives = 74/80 (91%)
Frame = -1
Query: 528 TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDNFAVSDSPE 349
TVGKFSVIW+FQQVKN +HECY +Q+GLK CYCYKIVL++ESIV+SRFM+DNFA+S SPE
Sbjct: 566 TVGKFSVIWNFQQVKNGSHECYHDQEGLKKCYCYKIVLRNESIVDSRFMNDNFAISGSPE 625
Query: 348 APLVVATPMKVSSISMSGKR 289
APLV+ATPMKVSS S+S KR
Sbjct: 626 APLVIATPMKVSSFSLSSKR 645
>sp|P40781|CYP4_CYNCA CYPRO4 PROTEIN gi|322804|pir||S28592 cypro4 protein - cardoon
gi|17959|emb|CAA49354.1| cypro4 [Cynara cardunculus]
Length = 501
Score = 130 bits (328), Expect = 7e-30
Identities = 63/84 (75%), Positives = 73/84 (86%), Gaps = 2/84 (2%)
Frame = -1
Query: 528 TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDNF-AVSDSP 352
TVGKFSVIWDFQ+VKNS HECYRNQ+GLKSCYCYK++ KDESI+ES FM+D + AV DSP
Sbjct: 415 TVGKFSVIWDFQRVKNSGHECYRNQEGLKSCYCYKLMTKDESIIESLFMNDKYAAVGDSP 474
Query: 351 EAPLVVATPMKVSSISMS-GKRHG 283
EAPLV+ATP K++S SMS GK G
Sbjct: 475 EAPLVMATPKKITSFSMSDGKAKG 498
>ref|NP_810623.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482] gi|29339018|gb|AAO76817.1| conserved
hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 370
Score = 31.6 bits (70), Expect = 6.0
Identities = 22/76 (28%), Positives = 37/76 (47%), Gaps = 4/76 (5%)
Frame = -1
Query: 222 VLHMFKSVMLFILLYRKF*SALYLFSYLYCCH*FCDYKFGFVKTGLSS----FCFQF*KD 55
+L + V+LFI++ R +YL LY C FC ++ V+ G+ + F + K+
Sbjct: 97 ILSLISFVVLFIVIRRIGCGYIYLPILLYFCLFFCQFQLNIVRHGIMASFVWLAFSYIKE 156
Query: 54 *SHHYILLLNKMLYFL 7
S L K ++FL
Sbjct: 157 CS------LKKFVFFL 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,986,635
Number of Sequences: 1393205
Number of extensions: 7461492
Number of successful extensions: 23100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23084
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
