Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006432A_C01 KMC006432A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86194 hypothetical protein [imported] - Arabidopsis thalia... 243 2e-63
ref|NP_563755.1| expressed protein; protein id: At1g05960.1, sup... 243 2e-63
gb|AAK56279.1|AF367291_1 At1g05960/T21E18_20 [Arabidopsis thalia... 243 2e-63
ref|NP_197607.1| putative protein; protein id: At5g21080.1 [Arab... 214 6e-55
ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [... 195 4e-49
>pir||F86194 hypothetical protein [imported] - Arabidopsis thaliana
gi|8810459|gb|AAF80120.1|AC024174_2 Contains similarity
to an unknown protein T11A7.7 gi|2335096 from
Arabidopsis thaliana BAC T11A7 gb|AC002339 and contains
a tropomyosin PF|00261 domain. ESTs gb|AI995205,
gb|N37925, gb|F13889, gb|AV523107, gb|AV535948,
gb|AV558461, gb|F13888 come from this gene
Length = 1628
Score = 243 bits (620), Expect = 2e-63
Identities = 115/148 (77%), Positives = 131/148 (87%)
Frame = +1
Query: 196 MGVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKIGKLCDY 375
MGVMSRRV+P CGNLC CPSLRA SR PVKRYKK+LA+IFPRNQEAEPNDRKIGKLC+Y
Sbjct: 1 MGVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPRNQEAEPNDRKIGKLCEY 60
Query: 376 ASKNPLRIPKVTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHMPLFAGSLLEII 555
AS+NPLRIPK+T+ LEQ CYK+LRN GSVKVVLCIY+K LSSCKE MPLF+ SLL I+
Sbjct: 61 ASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQMPLFSCSLLSIV 120
Query: 556 RTLLEQTRTDEIRILGCNTLIDFIDRQT 639
RTLLEQT+ +E++ILGCNTL+DFI QT
Sbjct: 121 RTLLEQTKEEEVQILGCNTLVDFISLQT 148
>ref|NP_563755.1| expressed protein; protein id: At1g05960.1, supported by cDNA:
gi_14194168 [Arabidopsis thaliana]
Length = 982
Score = 243 bits (620), Expect = 2e-63
Identities = 115/148 (77%), Positives = 131/148 (87%)
Frame = +1
Query: 196 MGVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKIGKLCDY 375
MGVMSRRV+P CGNLC CPSLRA SR PVKRYKK+LA+IFPRNQEAEPNDRKIGKLC+Y
Sbjct: 1 MGVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPRNQEAEPNDRKIGKLCEY 60
Query: 376 ASKNPLRIPKVTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHMPLFAGSLLEII 555
AS+NPLRIPK+T+ LEQ CYK+LRN GSVKVVLCIY+K LSSCKE MPLF+ SLL I+
Sbjct: 61 ASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQMPLFSCSLLSIV 120
Query: 556 RTLLEQTRTDEIRILGCNTLIDFIDRQT 639
RTLLEQT+ +E++ILGCNTL+DFI QT
Sbjct: 121 RTLLEQTKEEEVQILGCNTLVDFISLQT 148
>gb|AAK56279.1|AF367291_1 At1g05960/T21E18_20 [Arabidopsis thaliana]
gi|25090223|gb|AAN72256.1| At1g05960/T21E18_20
[Arabidopsis thaliana]
Length = 731
Score = 243 bits (620), Expect = 2e-63
Identities = 115/148 (77%), Positives = 131/148 (87%)
Frame = +1
Query: 196 MGVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKIGKLCDY 375
MGVMSRRV+P CGNLC CPSLRA SR PVKRYKK+LA+IFPRNQEAEPNDRKIGKLC+Y
Sbjct: 1 MGVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPRNQEAEPNDRKIGKLCEY 60
Query: 376 ASKNPLRIPKVTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHMPLFAGSLLEII 555
AS+NPLRIPK+T+ LEQ CYK+LRN GSVKVVLCIY+K LSSCKE MPLF+ SLL I+
Sbjct: 61 ASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQMPLFSCSLLSIV 120
Query: 556 RTLLEQTRTDEIRILGCNTLIDFIDRQT 639
RTLLEQT+ +E++ILGCNTL+DFI QT
Sbjct: 121 RTLLEQTKEEEVQILGCNTLVDFISLQT 148
>ref|NP_197607.1| putative protein; protein id: At5g21080.1 [Arabidopsis thaliana]
Length = 980
Score = 214 bits (546), Expect = 6e-55
Identities = 102/152 (67%), Positives = 121/152 (79%)
Frame = +1
Query: 196 MGVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKIGKLCDY 375
MGV+SR V PVC +LCC CP+LRA SR PVKRYK LLADIFPR+Q+ +PNDRKIGKLC+Y
Sbjct: 1 MGVVSRTVFPVCESLCCFCPALRARSRHPVKRYKHLLADIFPRSQDEQPNDRKIGKLCEY 60
Query: 376 ASKNPLRIPKVTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHMPLFAGSLLEII 555
A+KNPLRIPK+T +LEQ CYK+LR E F SVK+V+ IY+K L SC E M LFA S L +I
Sbjct: 61 AAKNPLRIPKITTSLEQRCYKELRMEQFHSVKIVMSIYKKLLVSCNEQMLLFASSYLGLI 120
Query: 556 RTLLEQTRTDEIRILGCNTLIDFIDRQTDGTY 651
LL+QTR DE+RILGC L DF+ Q +GTY
Sbjct: 121 HILLDQTRYDEMRILGCEALYDFVTSQAEGTY 152
>ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [Arabidopsis
thaliana] gi|25408758|pir||F84846 hypothetical protein
At2g41830 [imported] - Arabidopsis thaliana
gi|2335096|gb|AAC02765.1| hypothetical protein
[Arabidopsis thaliana]
Length = 961
Score = 195 bits (496), Expect = 4e-49
Identities = 89/149 (59%), Positives = 120/149 (79%), Gaps = 3/149 (2%)
Frame = +1
Query: 199 GVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKIGKLCDYA 378
GV+SR+V+PVCG+LC +CP+LRA SRQPVKRYKKL+A+IFPRNQE NDRKIGKLC+YA
Sbjct: 6 GVISRQVLPVCGSLCILCPALRARSRQPVKRYKKLIAEIFPRNQEEGINDRKIGKLCEYA 65
Query: 379 SKNPLRIPK---VTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHMPLFAGSLLE 549
+KN +R+PK ++D+LE CYK+LRNE F S K+ +CIYR+ L +CKE +PLF+ L
Sbjct: 66 AKNAVRMPKFFQISDSLEHRCYKELRNENFHSAKIAMCIYRRLLVTCKEQIPLFSSGFLR 125
Query: 550 IIRTLLEQTRTDEIRILGCNTLIDFIDRQ 636
++ LL+QTR DE++I+GC +L +F+ Q
Sbjct: 126 TVQALLDQTRQDEMQIVGCQSLFEFVINQ 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,011,853
Number of Sequences: 1393205
Number of extensions: 10799951
Number of successful extensions: 25283
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 24193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25258
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
