Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006416A_C01 KMC006416A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB88706.1| CLP protease regulatory subunit CLPX [Arabidopsis... 68 5e-11
ref|NP_568792.1| ATP-dependent Clp protease ATP-binding subunit ... 68 5e-11
ref|NP_564423.1| ATP-dependent Clp protease ATP-binding subunit ... 48 7e-05
pir||D86457 hypothetical protein F10C21.5 - Arabidopsis thaliana... 48 7e-05
dbj|BAB90173.1| putative ATP-dependent Clp protease regulatory s... 48 7e-05
>gb|AAB88706.1| CLP protease regulatory subunit CLPX [Arabidopsis thaliana]
Length = 579
Score = 68.2 bits (165), Expect = 5e-11
Identities = 40/69 (57%), Positives = 49/69 (70%), Gaps = 4/69 (5%)
Frame = -1
Query: 482 DVIDAVVVDEEAIGKDGCRG-GAKILYGNGALDRYLSE---QKNDSETMEASGGDHESET 315
D+I+AVVVDEEA+ +G RG GAKIL G GAL RYLSE + + T E S G+ E E
Sbjct: 511 DMIEAVVVDEEAVEGEGRRGSGAKILRGKGALARYLSETNSKDSPQTTKEGSDGETEVEA 570
Query: 314 ELPSIVASM 288
E+PS+VASM
Sbjct: 571 EIPSVVASM 579
>ref|NP_568792.1| ATP-dependent Clp protease ATP-binding subunit ClpX1; protein id:
At5g53350.1, supported by cDNA: gi_14334859, supported
by cDNA: gi_2674202 [Arabidopsis thaliana]
gi|9759182|dbj|BAB09797.1| ATP-dependent Clp protease
regulatory subunit CLPX [Arabidopsis thaliana]
gi|14334860|gb|AAK59608.1| putative ATP-dependent Clp
protease ATP-binding subunit ClpX1 [Arabidopsis
thaliana] gi|23296603|gb|AAN13130.1| putative
ATP-dependent Clp protease ATP-binding subunit ClpX1
[Arabidopsis thaliana]
Length = 579
Score = 68.2 bits (165), Expect = 5e-11
Identities = 40/69 (57%), Positives = 49/69 (70%), Gaps = 4/69 (5%)
Frame = -1
Query: 482 DVIDAVVVDEEAIGKDGCRG-GAKILYGNGALDRYLSE---QKNDSETMEASGGDHESET 315
D+I+AVVVDEEA+ +G RG GAKIL G GAL RYLSE + + T E S G+ E E
Sbjct: 511 DMIEAVVVDEEAVEGEGRRGSGAKILRGKGALARYLSETNSKDSPQTTKEGSDGETEVEA 570
Query: 314 ELPSIVASM 288
E+PS+VASM
Sbjct: 571 EIPSVVASM 579
>ref|NP_564423.1| ATP-dependent Clp protease ATP-binding subunit ClpX, putative;
protein id: At1g33360.1 [Arabidopsis thaliana]
gi|12322572|gb|AAG51286.1|AC027035_9 CLP protease
regulatory subunit CLPX, putative [Arabidopsis thaliana]
Length = 650
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -1
Query: 485 DDVIDAVVVDEEAIGKDGCRG-GAKILYGNGALDRYLSEQKNDSET 351
D+ IDAV+VDEE+ + RG AKIL G+GA +RYLSE K+ T
Sbjct: 601 DERIDAVIVDEESTSSEASRGCTAKILRGDGAFERYLSENKSKDAT 646
>pir||D86457 hypothetical protein F10C21.5 - Arabidopsis thaliana
gi|12322385|gb|AAG51217.1|AC051630_14 CLP protease
regulatory subunit CLPX, putative; 15869-19379
[Arabidopsis thaliana]
Length = 670
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -1
Query: 485 DDVIDAVVVDEEAIGKDGCRG-GAKILYGNGALDRYLSEQKNDSET 351
D+ IDAV+VDEE+ + RG AKIL G+GA +RYLSE K+ T
Sbjct: 621 DERIDAVIVDEESTSSEASRGCTAKILRGDGAFERYLSENKSKDAT 666
>dbj|BAB90173.1| putative ATP-dependent Clp protease regulatory subunit CLPX [Oryza
sativa (japonica cultivar-group)]
gi|21328048|dbj|BAC00633.1| putative ATP-dependent Clp
protease regulatory subunit CLPX [Oryza sativa (japonica
cultivar-group)]
Length = 625
Score = 47.8 bits (112), Expect = 7e-05
Identities = 29/56 (51%), Positives = 37/56 (65%), Gaps = 5/56 (8%)
Frame = -1
Query: 476 IDAVVVDEEAIG---KDGCRGGAKILYGNGALDRYL--SEQKNDSETMEASGGDHE 324
+DAVVVDEEAIG + GC GAKIL G+GAL++Y+ + KN E E G+ E
Sbjct: 561 VDAVVVDEEAIGSIDRPGC--GAKILRGDGALEQYITNTNMKNSMEANEGLAGELE 614
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,842,911
Number of Sequences: 1393205
Number of extensions: 7928338
Number of successful extensions: 17760
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17731
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
