Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006415A_C01 KMC006415A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_231851.1| similar to Contactin associated protein-like 2 ... 34 0.98
ref|XP_231702.1| similar to Contactin associated protein-like 2 ... 34 0.98
ref|XP_144725.1| similar to Contactin associated protein-like 2 ... 33 1.7
ref|XP_145236.1| similar to Contactin associated protein-like 2 ... 33 2.8
>ref|XP_231851.1| similar to Contactin associated protein-like 2 precursor (Cell
recognition molecule Caspr2) [Rattus norvegicus]
Length = 286
Score = 34.3 bits (77), Expect = 0.98
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 327 KQHLSPALVQFNVNSSASPFQSPCILSYLSSI 422
+QHL+P L Q ++ S S ++PCIL Y+SS+
Sbjct: 125 QQHLAPDLAQEQIHFSFSTTKAPCILLYVSSL 156
>ref|XP_231702.1| similar to Contactin associated protein-like 2 precursor (Cell
recognition molecule Caspr2) [Rattus norvegicus]
Length = 325
Score = 34.3 bits (77), Expect = 0.98
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 327 KQHLSPALVQFNVNSSASPFQSPCILSYLSSI 422
+QHL+P L Q ++ S S ++PCIL Y+SS+
Sbjct: 125 QQHLAPDLAQEQIHFSFSTTKAPCILLYVSSL 156
>ref|XP_144725.1| similar to Contactin associated protein-like 2 precursor (Cell
recognition molecule Caspr2) [Mus musculus]
Length = 133
Score = 33.5 bits (75), Expect = 1.7
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 327 KQHLSPALVQFNVNSSASPFQSPCILSYLSSI 422
+QHL+P L Q ++ S S ++PCIL Y+SS+
Sbjct: 57 QQHLAPDLAQEQIHFSFSITKAPCILLYVSSL 88
>ref|XP_145236.1| similar to Contactin associated protein-like 2 precursor (Cell
recognition molecule Caspr2) [Mus musculus]
Length = 877
Score = 32.7 bits (73), Expect = 2.8
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 327 KQHLSPALVQFNVNSSASPFQSPCILSYLSS 419
+QHL+P L Q ++ S S ++PCI+ Y+SS
Sbjct: 145 QQHLAPDLAQEQIHFSFSTTKAPCIILYVSS 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,722,470
Number of Sequences: 1393205
Number of extensions: 9919161
Number of successful extensions: 19750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19747
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
