Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006412A_C01 KMC006412A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194891.1| putative protein; protein id: At4g31630.1 [Arab... 36 0.26
ref|NP_180045.1| unknown protein; protein id: At2g24690.1 [Arabi... 36 0.26
pir||T14433 reproductive meristem protein 1 - broccoli gi|317042... 36 0.34
gb|AAO34491.1| putative auxin response factor [Oryza sativa (jap... 35 0.44
ref|NP_180044.1| unknown protein; protein id: At2g24680.1 [Arabi... 35 0.44
>ref|NP_194891.1| putative protein; protein id: At4g31630.1 [Arabidopsis thaliana]
gi|7486325|pir||T05107 hypothetical protein F28M20.180 -
Arabidopsis thaliana gi|3281864|emb|CAA19760.1| putative
protein [Arabidopsis thaliana]
gi|7270066|emb|CAB79881.1| putative protein [Arabidopsis
thaliana]
Length = 512
Score = 36.2 bits (82), Expect = 0.26
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 261 LLSQNRKDVR--IGSGWKKFCTRNGVRAGDLCCFK 163
LL N+K + + GW+ FC NG++AG +C FK
Sbjct: 216 LLRHNKKTGQAFMRGGWRSFCRNNGIKAGSICRFK 250
>ref|NP_180045.1| unknown protein; protein id: At2g24690.1 [Arabidopsis thaliana]
gi|25412239|pir||G84639 hypothetical protein At2g24690
[imported] - Arabidopsis thaliana
gi|20197974|gb|AAM15334.1| unknown protein [Arabidopsis
thaliana]
Length = 682
Score = 36.2 bits (82), Expect = 0.26
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 261 LLSQNRKDVRIGSGWKKFCTRNGVRAGDLCCFK 163
LL NR + +G GWK F NG++ GD FK
Sbjct: 79 LLENNRGRMTLGDGWKSFVKANGLKTGDTYTFK 111
Score = 31.2 bits (69), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 237 VRIGSGWKKFCTRNGVRAGDLCCFKF 160
V +G+GWK FC NGV G+ +F
Sbjct: 642 VVVGNGWKGFCEANGVMLGETFVLEF 667
Score = 31.2 bits (69), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (49%)
Frame = -3
Query: 303 LKLRGHVGDDVTCQLLSQNRKDVRIGSGWKKFCTRNGVRAGD 178
+ L G G LL + + + +G GWK F NG++ GD
Sbjct: 219 ITLLGTDGAKWMASLLLEKKGRMSLGKGWKDFAKANGLKTGD 260
>pir||T14433 reproductive meristem protein 1 - broccoli
gi|3170424|gb|AAC18082.1| reproductive meristem gene 1
[Brassica oleracea var. botrytis]
Length = 497
Score = 35.8 bits (81), Expect = 0.34
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -3
Query: 231 IGSGWKKFCTRNGVRAGDLCCFKFTNIAERIV 136
I GW FC+ NG+ GD C FK + ER V
Sbjct: 202 ITRGWANFCSANGLIRGDFCYFKLSESGERPV 233
>gb|AAO34491.1| putative auxin response factor [Oryza sativa (japonica
cultivar-group)]
Length = 1029
Score = 35.4 bits (80), Expect = 0.44
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -3
Query: 321 PFGVSPLKLRGHVGD-DVTCQLLSQNRKDVRIGSGWKKFCTRNGVRAGDLCCFKFTNIAE 145
PF + L+ H + +V C+ +++ + R+ +GW +F N ++ GD+C F+ E
Sbjct: 961 PFKELNMTLQRHGKNWEVLCR--TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKE 1018
Query: 144 RIVEVSIV 121
+ V I+
Sbjct: 1019 YSMNVHII 1026
>ref|NP_180044.1| unknown protein; protein id: At2g24680.1 [Arabidopsis thaliana]
gi|25412237|pir||F84639 hypothetical protein At2g24680
[imported] - Arabidopsis thaliana
gi|4572666|gb|AAD23881.1| unknown protein [Arabidopsis
thaliana]
Length = 851
Score = 35.4 bits (80), Expect = 0.44
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 11/39 (28%)
Frame = -3
Query: 261 LLSQNRKD-----------VRIGSGWKKFCTRNGVRAGD 178
LL QNRK V +GSGWK FC NGV+ G+
Sbjct: 781 LLGQNRKKWFAYLLSKSGFVALGSGWKGFCEANGVKTGE 819
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,852,988
Number of Sequences: 1393205
Number of extensions: 10690385
Number of successful extensions: 28211
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 27326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28200
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
