Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006374A_C01 KMC006374A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196570.1| putative protein; protein id: At5g10080.1 [Arab... 50 2e-05
ref|NP_440867.1| DNA polymerase III subunit [Synechocystis sp. P... 38 0.070
ref|XP_203437.1| similar to nucleosome remodeling factor large s... 37 0.12
gb|AAH21489.1| Unknown (protein for IMAGE:5345342) [Mus musculus] 37 0.12
ref|NP_598197.1| mucin 10 [Rattus norvegicus] gi|627969|pir||A53... 36 0.27
>ref|NP_196570.1| putative protein; protein id: At5g10080.1 [Arabidopsis thaliana]
gi|11281625|pir||T50012 hypothetical protein T31P16.70 -
Arabidopsis thaliana gi|7960727|emb|CAB92049.1| putative
protein [Arabidopsis thaliana]
Length = 528
Score = 49.7 bits (117), Expect = 2e-05
Identities = 35/89 (39%), Positives = 49/89 (54%), Gaps = 7/89 (7%)
Frame = -3
Query: 493 ENLRFGWSRSNCEDSVGVRVNSTSP----SPSTLPANQQQSPPNTHSVPPAIAGHT---S 335
EN++ GWS S C++ + SP SP+ LP ++QQS H+V PAIAG T +
Sbjct: 442 ENMKLGWSPSKCQED-KIEPPQASPGSTSSPNPLPTDEQQS-RGGHAVSPAIAGKTPSKT 499
Query: 334 PQPSTATPGFTSWHLLNSLSLICLLLYWL 248
P S++ + L NSL LLL+WL
Sbjct: 500 PSSSSSYSFSSIMRLFNSL----LLLHWL 524
>ref|NP_440867.1| DNA polymerase III subunit [Synechocystis sp. PCC 6803]
gi|7469304|pir||S77213 DNA-directed DNA polymerase (EC
2.7.7.7) III chain dnaX - Synechocystis sp. (strain PCC
6803) gi|1652627|dbj|BAA17547.1| DNA polymerase III
subunit [Synechocystis sp. PCC 6803]
Length = 1116
Score = 37.7 bits (86), Expect = 0.070
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Frame = -3
Query: 460 CEDSVGVRVNSTSPS-PSTLPANQQQSPPNTHSVPPAIAGHTSPQPSTA 317
C SV V + PS P T P N +PP +HS PPA A SP P+ A
Sbjct: 933 CGQSVKVNLVVGKPSTPETTPVNS--APPPSHSKPPAFAPEPSPPPTAA 979
>ref|XP_203437.1| similar to nucleosome remodeling factor large subunit NURF301
[Drosophila melanogaster] [Mus musculus]
gi|25072294|ref|XP_126724.3| similar to nucleosome
remodeling factor large subunit NURF301 [Drosophila
melanogaster] [Mus musculus]
Length = 382
Score = 37.0 bits (84), Expect = 0.12
Identities = 18/37 (48%), Positives = 26/37 (69%), Gaps = 1/37 (2%)
Frame = -3
Query: 424 SPSPSTLPANQQQSPPNTHSVPPAIAGH-TSPQPSTA 317
+P+P+ PA + PP+THS+PP AGH T+P P T+
Sbjct: 138 APAPAAPPAPPRSPPPSTHSLPP--AGHPTAPLPVTS 172
>gb|AAH21489.1| Unknown (protein for IMAGE:5345342) [Mus musculus]
Length = 645
Score = 37.0 bits (84), Expect = 0.12
Identities = 18/37 (48%), Positives = 26/37 (69%), Gaps = 1/37 (2%)
Frame = -3
Query: 424 SPSPSTLPANQQQSPPNTHSVPPAIAGH-TSPQPSTA 317
+P+P+ PA + PP+THS+PP AGH T+P P T+
Sbjct: 401 APAPAAPPAPPRSPPPSTHSLPP--AGHPTAPLPVTS 435
>ref|NP_598197.1| mucin 10 [Rattus norvegicus] gi|627969|pir||A53715 apomucin
precursor - rat gi|476097|gb|AAA20966.1| apomucin
Length = 322
Score = 35.8 bits (81), Expect = 0.27
Identities = 20/53 (37%), Positives = 30/53 (55%)
Frame = -3
Query: 433 NSTSPSPSTLPANQQQSPPNTHSVPPAIAGHTSPQPSTATPGFTSWHLLNSLS 275
+ST+P+P+T P +P T +P T+P+PST+T TS + NS S
Sbjct: 247 DSTTPAPTTKPTTDSTTPAPTTKIP------TTPKPSTSTAIPTSTNSANSSS 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,480,215
Number of Sequences: 1393205
Number of extensions: 10730103
Number of successful extensions: 45898
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 38386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45166
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
