Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006358A_C01 KMC006358A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64612.1| OSJNBa0083M16.12 [Oryza sativa (japonica cultiva... 76 4e-13
gb|AAO39858.1| hypothetical protein [Oryza sativa (japonica cult... 75 5e-13
pir||T01769 hypothetical protein A_IG002P16.18 - Arabidopsis tha... 63 3e-09
ref|NP_198043.1| putative protein; protein id: At5g26910.1 [Arab... 63 3e-09
ref|NP_191424.1| putative protein; protein id: At3g58650.1 [Arab... 57 3e-07
>dbj|BAB64612.1| OSJNBa0083M16.12 [Oryza sativa (japonica cultivar-group)]
Length = 1008
Score = 75.9 bits (185), Expect = 4e-13
Identities = 32/100 (32%), Positives = 56/100 (56%)
Frame = -3
Query: 541 FLFDCVVEYLESNCCKYFHSGFRAWTKLPLCVKGNVLAQEVKREMKKWECKAGMMPDEII 362
F+FDC++E + S C + G++AW +LPL + ++L +E+ +E+ W P+ +
Sbjct: 907 FIFDCIIESVNSKFCDFGKCGYKAWLRLPLSLTEDLLKREISKEICNWRETRETTPNRVA 966
Query: 361 EWEMSHSLGKWTDFDIEAFEAGVGIDGDILQILVGEIVED 242
E E+ +W +EAF+ + I+ DIL+ LV E D
Sbjct: 967 EKELDQMTPRWDACQVEAFDISIAIEHDILEALVDEFAFD 1006
>gb|AAO39858.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 886
Score = 75.5 bits (184), Expect = 5e-13
Identities = 37/101 (36%), Positives = 60/101 (58%)
Frame = -3
Query: 538 LFDCVVEYLESNCCKYFHSGFRAWTKLPLCVKGNVLAQEVKREMKKWECKAGMMPDEIIE 359
LF+CV E L C YF++G+ +W L + + + A+E+ EM + M DE++
Sbjct: 780 LFECVNEILSVRCAYYFNAGYGSWF-LGMAILKKLTAEEIYAEMTDLKVAEEWMVDELVY 838
Query: 358 WEMSHSLGKWTDFDIEAFEAGVGIDGDILQILVGEIVEDLV 236
EMS LG W DF +E++E+G+ I ++L L+ E+V DL+
Sbjct: 839 KEMSSPLGSWVDFKLESYESGIDITTELLGSLIDEMVADLL 879
>pir||T01769 hypothetical protein A_IG002P16.18 - Arabidopsis thaliana
gi|2191167|gb|AAB61053.1| Hypothetical protein F2P16.18
[Arabidopsis thaliana]
Length = 912
Score = 63.2 bits (152), Expect = 3e-09
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Frame = -3
Query: 625 MASDAMWTEFEGFMAYKGDSKQRNKLKGFLFDCVVEYLESNCCKYFHSGFRAWTKLPLCV 446
MA+D + M +G+ + LFD V + L C + F R L
Sbjct: 754 MATDVLPASLFDEMEGRGEVTAAKIKRKTLFDFVNKCLALRCEQMFMGSCRG-----LLG 808
Query: 445 KGNVL-------AQEVKREMKKWECKAGMMPDEIIEWEMSHSLGKWTDFDIEAFEAGVGI 287
KG L A+E+ RE+ + MM DE+++ EMS G+W DF+ E +E G+ I
Sbjct: 809 KGGFLFEQRDWLAEELNREIHGLKKMREMMMDELVDKEMSSFEGRWLDFERETYEEGIDI 868
Query: 286 DGDILQILVGEIVEDLV 236
+G+I+ LV ++V DLV
Sbjct: 869 EGEIVSTLVDDLVNDLV 885
>ref|NP_198043.1| putative protein; protein id: At5g26910.1 [Arabidopsis thaliana]
Length = 900
Score = 63.2 bits (152), Expect = 3e-09
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Frame = -3
Query: 625 MASDAMWTEFEGFMAYKGDSKQRNKLKGFLFDCVVEYLESNCCKYFHSGFRAWTKLPLCV 446
MA+D + M +G+ + LFD V + L C + F R L
Sbjct: 742 MATDVLPASLFDEMEGRGEVTAAKIKRKTLFDFVNKCLALRCEQMFMGSCRG-----LLG 796
Query: 445 KGNVL-------AQEVKREMKKWECKAGMMPDEIIEWEMSHSLGKWTDFDIEAFEAGVGI 287
KG L A+E+ RE+ + MM DE+++ EMS G+W DF+ E +E G+ I
Sbjct: 797 KGGFLFEQRDWLAEELNREIHGLKKMREMMMDELVDKEMSSFEGRWLDFERETYEEGIDI 856
Query: 286 DGDILQILVGEIVEDLV 236
+G+I+ LV ++V DLV
Sbjct: 857 EGEIVSTLVDDLVNDLV 873
>ref|NP_191424.1| putative protein; protein id: At3g58650.1 [Arabidopsis thaliana]
gi|11292204|pir||T45685 hypothetical protein F14P22.240
- Arabidopsis thaliana gi|6735382|emb|CAB68203.1|
putative protein [Arabidopsis thaliana]
Length = 820
Score = 56.6 bits (135), Expect = 3e-07
Identities = 25/71 (35%), Positives = 48/71 (67%)
Frame = -3
Query: 439 NVLAQEVKREMKKWECKAGMMPDEIIEWEMSHSLGKWTDFDIEAFEAGVGIDGDILQILV 260
++LA+EV RE+K + MM DE+++ +MS G+W ++ E FE G+ ++G+I+ LV
Sbjct: 743 DLLAEEVNREVKGLKKMREMMIDELVDHDMSCFEGRWIGYEREMFEEGIDMEGEIVSALV 802
Query: 259 GEIVEDLVGSN 227
++V D++ ++
Sbjct: 803 DDLVSDILSTS 813
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,785,277
Number of Sequences: 1393205
Number of extensions: 12693407
Number of successful extensions: 35795
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 34214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35721
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
