Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006348A_C01 KMC006348A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD39957.1|AF144706_1 small zinc finger-like protein [Pinus t... 144 6e-34
gb|AAD40002.1|AF150096_1 small zinc finger-like protein [Lycoper... 138 3e-32
ref|NP_565682.1| expressed protein; protein id: At2g29530.1, sup... 132 2e-30
gb|AAK82456.1|AC091247_23 putative zinc finger protein [Oryza sa... 116 2e-25
gb|AAD39998.1|AF150092_1 small zinc finger-like protein [Drosoph... 69 4e-11
>gb|AAD39957.1|AF144706_1 small zinc finger-like protein [Pinus taeda]
Length = 84
Score = 144 bits (363), Expect = 6e-34
Identities = 63/82 (76%), Positives = 76/82 (91%)
Frame = -2
Query: 517 MAAPPSALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDRC 338
MA+ PS LDK+QIFGMAE+EMEYRVELFNK+T+TCF+KC+E RYKESELNMGE SC+DRC
Sbjct: 1 MASVPSGLDKDQIFGMAEQEMEYRVELFNKLTKTCFDKCIERRYKESELNMGECSCVDRC 60
Query: 337 VSKYWHVTNLIGQLLGSGKPPM 272
V+KYW VT+++GQLLGS +PPM
Sbjct: 61 VAKYWQVTSIVGQLLGSSRPPM 82
>gb|AAD40002.1|AF150096_1 small zinc finger-like protein [Lycopersicon esculentum]
Length = 81
Score = 138 bits (348), Expect = 3e-32
Identities = 62/80 (77%), Positives = 71/80 (88%)
Frame = -2
Query: 517 MAAPPSALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDRC 338
MA PS L++EQIF MAEKEMEYRVE+FNK+T TCF KCVEN+YK+SELNMGENSCIDRC
Sbjct: 1 MAGVPSNLEREQIFSMAEKEMEYRVEMFNKLTHTCFKKCVENKYKDSELNMGENSCIDRC 60
Query: 337 VSKYWHVTNLIGQLLGSGKP 278
VSKYW VTNL+G LLG+ +P
Sbjct: 61 VSKYWQVTNLVGTLLGNTRP 80
>ref|NP_565682.1| expressed protein; protein id: At2g29530.1, supported by cDNA:
gi_5107173 [Arabidopsis thaliana]
gi|12230205|sp|Q9ZW33|IM10_ARATH Mitochondrial import
inner membrane translocase subunit Tim10
gi|25408033|pir||D84697 hypothetical protein At2g29530
[imported] - Arabidopsis thaliana
gi|3980383|gb|AAC95186.1| expressed protein [Arabidopsis
thaliana] gi|5107174|gb|AAD39999.1|AF150093_1 small zinc
finger-like protein [Arabidopsis thaliana]
gi|28466793|gb|AAO44005.1| At2g29530 [Arabidopsis
thaliana]
Length = 83
Score = 132 bits (333), Expect = 2e-30
Identities = 60/83 (72%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Frame = -2
Query: 517 MAAP-PSALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDR 341
MA+P P + KEQ F MA+ EMEYRVELFNK+ QTCFNKCV+ RYKE+ELNMGENSCIDR
Sbjct: 1 MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDR 60
Query: 340 CVSKYWHVTNLIGQLLGSGKPPM 272
CVSKYW V ++GQLL +GKPP+
Sbjct: 61 CVSKYWQVNGMVGQLLSAGKPPV 83
>gb|AAK82456.1|AC091247_23 putative zinc finger protein [Oryza sativa]
Length = 70
Score = 116 bits (290), Expect = 2e-25
Identities = 49/64 (76%), Positives = 59/64 (91%)
Frame = -2
Query: 505 PSALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDRCVSKY 326
P+ L+KEQ+FGM EKEMEYRV+LFN++TQTCF+KC+E RYKE+ELNMGENSCIDRCVSKY
Sbjct: 7 PTQLEKEQMFGMMEKEMEYRVDLFNRLTQTCFDKCIEKRYKEAELNMGENSCIDRCVSKY 66
Query: 325 WHVT 314
W +
Sbjct: 67 WQAS 70
>gb|AAD39998.1|AF150092_1 small zinc finger-like protein [Drosophila melanogaster]
Length = 92
Score = 68.6 bits (166), Expect = 4e-11
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = -2
Query: 517 MAAPP-SALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDR 341
MA P S D+ ++ M E E+E +L+N+MT C KC+ RY ESEL GE CIDR
Sbjct: 1 MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDR 60
Query: 340 CVSKYWHVTNLIGQLL 293
CV+KY + IG+ L
Sbjct: 61 CVAKYLDIHEKIGKKL 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,859,227
Number of Sequences: 1393205
Number of extensions: 7475737
Number of successful extensions: 17137
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 16796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17102
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
