Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006314A_C01 KMC006314A_c01
(815 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196189.1| arginine-tRNA-protein transferase 1 homolog; pr... 112 9e-24
pir||T51729 arginine-tRNA-protein transferase 1 [imported] - Ara... 109 6e-23
ref|NP_187733.1| arginine-tRNA-protein transferase, putative; pr... 107 3e-22
emb|CAA70874.1| MEMA [Homo sapiens] 43 0.006
gb|AAO51254.1| similar to Plasmodium falciparum. Hypothetical pr... 42 0.008
>ref|NP_196189.1| arginine-tRNA-protein transferase 1 homolog; protein id:
At5g05700.1, supported by cDNA: gi_3806097 [Arabidopsis
thaliana] gi|13123999|sp|Q9ZT48|ATE1_ARATH
Arginine-tRNA-protein transferase 1 (R-transferase 1)
(Arginyltransferase 1) (Arginyl-tRNA--protein
transferase 1) gi|9759095|dbj|BAB09664.1|
arginine-tRNA-protein transferase 1 homolog [Arabidopsis
thaliana]
Length = 632
Score = 112 bits (279), Expect = 9e-24
Identities = 59/161 (36%), Positives = 97/161 (59%), Gaps = 14/161 (8%)
Frame = -2
Query: 814 PLRYQWIPFDIARPLLDRMPYAVLSDYSVLQNGDLSLPQVTEDVM---GRQLDDVGQEDA 644
PLR+QW+PF++ARP+LD+ PY +LSD ++ N L +E ++ + +D+ Q +
Sbjct: 471 PLRFQWVPFEVARPMLDKKPYVILSDIAISHNQCSLLAGASETLVEPAASEHEDMEQGET 530
Query: 643 NDVPMY---EDEEMDESEVESSDDEPDLENTSSVEP--------ENVDVSKVLLGIKGSR 497
ND M EDE+ DE + + DD+ ++ T S + ++ D++ +L+G+ GS+
Sbjct: 531 NDNFMGCSDEDEDEDEDDDDDDDDDEEMYETESEDSHIESDPGSKDNDINNILIGLYGSQ 590
Query: 496 ARYKDLRSVFGAEQQRYLESQLQKYRRVVGTVLSERMVYSL 374
RYK++R + ++ LE LQ YR+VVG LSERMVY +
Sbjct: 591 YRYKEMRQIITPVGRKQLEPMLQSYRKVVGAELSERMVYEI 631
>pir||T51729 arginine-tRNA-protein transferase 1 [imported] - Arabidopsis
thaliana gi|3806098|gb|AAD12368.1| arginine-tRNA-protein
transferase 1; Ate1p [Arabidopsis thaliana]
Length = 629
Score = 109 bits (272), Expect = 6e-23
Identities = 60/158 (37%), Positives = 95/158 (59%), Gaps = 11/158 (6%)
Frame = -2
Query: 814 PLRYQWIPFDIARPLLDRMPYAVLSDYSVLQNGDLSLPQVTEDVM---GRQLDDVGQEDA 644
PLR+QW+PF++ARP+LD+ PY +LSD ++ N L +E ++ + +D+ Q +
Sbjct: 471 PLRFQWVPFEVARPMLDKKPYVILSDIAISHNQCSLLAGASETLVEPAASEHEDMEQGET 530
Query: 643 NDVPM-YEDEEMDESEVESSDDEPDLENTSS---VEPE----NVDVSKVLLGIKGSRARY 488
ND M DE+ DE + + DDE E S +E + + D++ +L+G+ GS+ RY
Sbjct: 531 NDNFMGCSDEDEDEDDDDDDDDEEMYETESEDSHIESDPGSKDNDINNILIGLYGSQYRY 590
Query: 487 KDLRSVFGAEQQRYLESQLQKYRRVVGTVLSERMVYSL 374
K++R + ++ LE LQ YR+VVG LSERMVY +
Sbjct: 591 KEMRQIITPVGRKQLEPMLQSYRKVVGAELSERMVYEI 628
>ref|NP_187733.1| arginine-tRNA-protein transferase, putative; protein id:
At3g11240.1, supported by cDNA: gi_13877874, supported
by cDNA: gi_15810658 [Arabidopsis thaliana]
gi|12321873|gb|AAG50969.1|AC073395_11
arginine-tRNA-protein transferase, putative; 58258-55831
[Arabidopsis thaliana]
gi|13877875|gb|AAK44015.1|AF370200_1 putative
arginine-tRNA-protein transferase [Arabidopsis thaliana]
gi|15810659|gb|AAL07254.1| putative
arginine-tRNA-protein transferase [Arabidopsis thaliana]
Length = 605
Score = 107 bits (266), Expect = 3e-22
Identities = 61/149 (40%), Positives = 88/149 (58%), Gaps = 2/149 (1%)
Frame = -2
Query: 814 PLRYQWIPFDIARPLLDRMPYAVLSDYSVLQNGDLSLPQVTEDVMGR--QLDDVGQEDAN 641
PLRYQW+PF++A+PLLD+ PY+VLS+ S + + S PQ +E ++ + +D+ Q D N
Sbjct: 468 PLRYQWVPFEVAKPLLDKKPYSVLSNISKVSSSSSS-PQASETLLESTSEHEDMEQGDTN 526
Query: 640 DVPMYEDEEMDESEVESSDDEPDLENTSSVEPENVDVSKVLLGIKGSRARYKDLRSVFGA 461
D +D+EM S+ +S D N S D++ +L+ + G R RYKD+
Sbjct: 527 D----DDDEMYNSDEDSDSDSSSSRNRS-------DITNILISLNGPRLRYKDIPRFKNP 575
Query: 460 EQQRYLESQLQKYRRVVGTVLSERMVYSL 374
Q+ LES L YR+VVG LSE MVY L
Sbjct: 576 VVQKQLESMLVSYRKVVGAELSEIMVYEL 604
>emb|CAA70874.1| MEMA [Homo sapiens]
Length = 586
Score = 42.7 bits (99), Expect = 0.006
Identities = 33/85 (38%), Positives = 45/85 (52%)
Frame = +3
Query: 459 SAPKTLRRSLYLARDPFIPSKTLLTSTFSGSTDDVFSRSGSSSELSTSDSSISSSSYIGT 638
S KT RS AR+ S++ +S+ S S+ S SGSSS +S S SSSS T
Sbjct: 421 SKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 480
Query: 639 SFASS*PTSSSCLPMTSSVT*GRDK 713
S +SS +SSS +SS + R +
Sbjct: 481 SGSSSRDSSSSTSTSSSSESRSRSR 505
Score = 34.7 bits (78), Expect = 1.7
Identities = 26/61 (42%), Positives = 33/61 (53%)
Frame = +3
Query: 567 SRSGSSSELSTSDSSISSSSYIGTSFASS*PTSSSCLPMTSSVT*GRDKSPFCKTE*SDK 746
SRS SSS S+S SS SSSS +S SS SSS ++S + RD S T S +
Sbjct: 440 SRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSTSSSSE 499
Query: 747 T 749
+
Sbjct: 500 S 500
>gb|AAO51254.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 1123
Score = 42.4 bits (98), Expect = 0.008
Identities = 30/67 (44%), Positives = 38/67 (55%)
Frame = +3
Query: 492 LARDPFIPSKTLLTSTFSGSTDDVFSRSGSSSELSTSDSSISSSSYIGTSFASS*PTSSS 671
L +D PS + TST S S+ S S SSS S+S SS SSSS +S +SS +SSS
Sbjct: 389 LIKDSSQPSTSTSTSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 448
Query: 672 CLPMTSS 692
+SS
Sbjct: 449 SSSSSSS 455
Score = 34.3 bits (77), Expect = 2.3
Identities = 25/61 (40%), Positives = 34/61 (54%)
Frame = +3
Query: 516 SKTLLTSTFSGSTDDVFSRSGSSSELSTSDSSISSSSYIGTSFASS*PTSSSCLPMTSSV 695
S + +S+ S S+ S S SSS S+S SS SSSS +S +SS +SSS +S
Sbjct: 407 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSQP 466
Query: 696 T 698
T
Sbjct: 467 T 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,293,589
Number of Sequences: 1393205
Number of extensions: 15442258
Number of successful extensions: 78511
Number of sequences better than 10.0: 358
Number of HSP's better than 10.0 without gapping: 54098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67835
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42016716300
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
