Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006311A_C01 KMC006311A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK62519.1| proline-rich extensin-like protein [Micrococcus s... 34 1.1
gb|AAF44796.1|AE003406_1 symbol=B4; synonym=BG:DS07660.4; match=... 33 1.9
ref|NP_477325.2| CG9239-PA [Drosophila melanogaster] gi|24584141... 33 1.9
ref|XP_157793.1| hypothetical protein XP_157793 [Mus musculus] 33 1.9
pir||T08619 probable metalloproteinase-disintegrin kuzbanian - f... 33 1.9
>gb|AAK62519.1| proline-rich extensin-like protein [Micrococcus sp. 28]
Length = 406
Score = 34.3 bits (77), Expect = 1.1
Identities = 18/43 (41%), Positives = 23/43 (52%)
Frame = -2
Query: 454 GHAGPFSAITSEPPPHTPLGNSSAPELEDGEIAVDDPPDAPQP 326
G A P S+ S PP +P G SS PE+ A D P +P+P
Sbjct: 22 GAAPPDSSGVSTPPDASPAGASSLPEVPAAPPAEDAPAPSPEP 64
>gb|AAF44796.1|AE003406_1 symbol=B4; synonym=BG:DS07660.4; match=method:''sim4'',
score:''1000.0'',
desc:''g2636726::gb|AF022364:Drosophila melanogaster B4
mRNA, complete cds. CDS:763..4053; PID:g2636727.'',
species:''Drosophila melanogaster'';
match=method:''BLASTX'', version:''2.0a19MP-WashU
[05-Feb-1998] [Build sol2.5-ultra 01:47:30
05-Feb-1998]'', score:''164.0'',
desc:''trEMBL::O22432:PUTATIVE CELL WALL PROTEIN.
organism:PINUS TAEDA (LOBLOLLY PINE). dbxref:GenBank;
AF013805; g2317764; -.'', species:''PINUS TAEDA
Length = 517
Score = 33.5 bits (75), Expect = 1.9
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 336 ASGGSSTAISPSSNSGAEEFPSGV*GGGSL 425
+S GSSTA S SS++GA F SG GGG++
Sbjct: 244 SSHGSSTAASSSSSTGANPFGSGGSGGGNI 273
>ref|NP_477325.2| CG9239-PA [Drosophila melanogaster] gi|24584141|ref|NP_723823.1|
CG9239-PB [Drosophila melanogaster]
gi|7298072|gb|AAF53312.1| CG9239-PB [Drosophila
melanogaster] gi|16648438|gb|AAL25484.1| LD48089p
[Drosophila melanogaster] gi|16769498|gb|AAL28968.1|
LD35137p [Drosophila melanogaster]
gi|22946411|gb|AAF53317.2| CG9239-PA [Drosophila
melanogaster]
Length = 1107
Score = 33.5 bits (75), Expect = 1.9
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 336 ASGGSSTAISPSSNSGAEEFPSGV*GGGSL 425
+S GSSTA S SS++GA F SG GGG++
Sbjct: 255 SSHGSSTAASSSSSTGANPFGSGGSGGGNI 284
>ref|XP_157793.1| hypothetical protein XP_157793 [Mus musculus]
Length = 258
Score = 33.5 bits (75), Expect = 1.9
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 345 GSSTAISPSSNSGAEEFPSGV*GGGSLVIALKGPAWPSLITSAFFSSTIFPGPGFFPLTV 524
G T +SPSS+ GA E P G G+ +LK ++ S +A SST+ G F L
Sbjct: 59 GDLTEVSPSSSRGAREAPVYAAGSGN-NSSLKRQSYKSNSGAAARSSTLNVSYGIFRLNT 117
Query: 525 VH 530
+H
Sbjct: 118 IH 119
>pir||T08619 probable metalloproteinase-disintegrin kuzbanian - fruit fly
(Drosophila melanogaster) gi|2636727|gb|AAC47804.1| B4
gene product [Drosophila melanogaster]
Length = 1096
Score = 33.5 bits (75), Expect = 1.9
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 336 ASGGSSTAISPSSNSGAEEFPSGV*GGGSL 425
+S GSSTA S SS++GA F SG GGG++
Sbjct: 244 SSHGSSTAASSSSSTGANPFGSGGSGGGNI 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,205,930
Number of Sequences: 1393205
Number of extensions: 12213507
Number of successful extensions: 39561
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 36337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39471
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
