Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006303A_C01 KMC006303A_c01
(931 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_619569.1| putative movement protein (MP) [Faba bean necro... 35 2.1
ref|NP_477595.1| wsv073 [shrimp white spot syndrome virus] gi|15... 35 2.1
ref|NP_002564.1| platelet-activating factor acetylhydrolase, iso... 34 2.8
emb|CAA72211.1| putative movement protein [Faba bean necrotic ye... 34 3.6
ref|NP_032802.1| platelet-activating factor acetylhydrolase, iso... 33 4.7
>ref|NP_619569.1| putative movement protein (MP) [Faba bean necrotic yellows virus]
gi|4995162|emb|CAB44022.1| putative movement protein
(MP) [Faba bean necrotic yellows virus]
Length = 114
Score = 34.7 bits (78), Expect = 2.1
Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Frame = -3
Query: 323 IGAVLLVCCLYRVVWVCGLSACFT------RAGAWRKKSGGSPPRVASTLSPT 183
IG +LLV V+WVC + AC+ AW S RVASTL+ T
Sbjct: 28 IGIILLVTVCLTVLWVCIMLACYVPGFLKKTLEAWLNSSSLMKRRVASTLTRT 80
>ref|NP_477595.1| wsv073 [shrimp white spot syndrome virus]
gi|15021448|gb|AAK77725.1|AF369029_56 ORF56, gene family
8 [shrimp white spot syndrome virus]
gi|17016471|gb|AAL33077.1| wsv073 [shrimp white spot
syndrome virus] gi|19481722|gb|AAL88998.1| WSSV130
[shrimp white spot syndrome virus]
Length = 422
Score = 34.7 bits (78), Expect = 2.1
Identities = 21/66 (31%), Positives = 34/66 (50%)
Frame = -2
Query: 792 QARKLKQSFGNQ*PGNIRVKLLREKVYEIIFSSSFSQVFFLVYFKKEFRTVRISILRACE 613
++ +K+ GN N+ ++ E+ Y+ F + F+QVFF KE R V +SI C
Sbjct: 259 ESETIKEKAGNSLIRNVEFIVVDEQTYKSFFPA-FNQVFFSFKVNKEKREVTVSINNGCV 317
Query: 612 LSNANV 595
AN+
Sbjct: 318 GIVANI 323
>ref|NP_002564.1| platelet-activating factor acetylhydrolase, isoform Ib, gamma
subunit 29kDa; platelet-activating factor
acetylhydrolase, isoform Ib, gamma subunit (29kD);
Platelet-activating factor acetylhydrolase, isoform Ib,
gamma subunit [Homo sapiens]
gi|3024344|sp|Q15102|PA1G_HUMAN Platelet-activating
factor acetylhydrolase IB gamma subunit (PAF
acetylhydrolase 29 kDa subunit) (PAF-AH 29 kDa subunit)
(PAF-AH gamma subunit) (PAFAH gamma subunit)
gi|1363942|pir||JC4246 platelet-activating factor
acetylhydrolase (EC 3.1.1.-) gamma chain - human
gi|1122219|dbj|BAA09706.1| platelet activating factor
acetylhydrolase IB gamma-subunit [Homo sapiens]
gi|4210502|gb|AAD11989.1| PA1G_HUMAN; PAF
ACETYLHYDROLASE 29 KD SUBUNIT; PAF-AH 29 KD SUBUNIT;
PAF-AH GAMMA SUBUNIT [Homo sapiens]
gi|12804315|gb|AAH03016.1|AAH03016 platelet-activating
factor acetylhydrolase, isoform Ib, gamma subunit (29kD)
[Homo sapiens] gi|14043830|gb|AAH07863.1|AAH07863
platelet-activating factor acetylhydrolase, isoform Ib,
gamma subunit (29kD) [Homo sapiens]
Length = 231
Score = 34.3 bits (77), Expect = 2.8
Identities = 17/40 (42%), Positives = 20/40 (49%)
Frame = +1
Query: 175 NRQVGESVEATLGGEPPLFFLQAPARVKHADSPQTHTTLY 294
NRQV E V A L G P FL A H+D +H +Y
Sbjct: 152 NRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMY 191
>emb|CAA72211.1| putative movement protein [Faba bean necrotic yellows virus]
Length = 114
Score = 33.9 bits (76), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Frame = -3
Query: 323 IGAVLLVCCLYRVVWVCGLSACFT------RAGAWRKKSGGSPPRVASTLSPT 183
IG +LLV V+WVC + AC+ AW S RVASTL+ T
Sbjct: 28 IGIILLVTVCLIVLWVCIMLACYVPGFLKKTLEAWLNSSSLMKRRVASTLTRT 80
>ref|NP_032802.1| platelet-activating factor acetylhydrolase, isoform 1b, alpha1
subunit [Mus musculus] gi|3024347|sp|Q61205|PA1G_MOUSE
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB GAMMA
SUBUNIT (PAF ACETYLHYDROLASE 29 KDA SUBUNIT) (PAF-AH 29
KDA SUBUNIT) (PAF-AH GAMMA SUBUNIT) (PAFAH GAMMA
SUBUNIT) gi|1373361|gb|AAC52996.1| platelet activating
factor acetylhydrolase isoform Ib gamma subunit [Mus
musculus]
Length = 232
Score = 33.5 bits (75), Expect = 4.7
Identities = 17/40 (42%), Positives = 20/40 (49%)
Frame = +1
Query: 175 NRQVGESVEATLGGEPPLFFLQAPARVKHADSPQTHTTLY 294
NRQV E V A L G P FL A H+D +H +Y
Sbjct: 153 NRQVNELVRAALAGYPRAHFLDADPGFVHSDGTISHHDMY 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 816,610,048
Number of Sequences: 1393205
Number of extensions: 18581737
Number of successful extensions: 45825
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 43807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45809
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51582455952
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
