Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006286A_C01 KMC006286A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86152 T7I23.15 protein - Arabidopsis thaliana gi|3258569|g... 198 4e-50
gb|AAO22642.1| unknown protein [Arabidopsis thaliana] 198 4e-50
ref|NP_171710.1| unknown protein; protein id: At1g02080.1 [Arabi... 198 4e-50
gb|AAK55455.1|AC069300_10 putative transcription regulatory prot... 184 7e-46
ref|NP_724798.1| CG1884-PB [Drosophila melanogaster] gi|7303881|... 175 3e-43
>pir||G86152 T7I23.15 protein - Arabidopsis thaliana gi|3258569|gb|AAC24379.1|
Similar to yeast general negative regulator of
transcription subunit 1 [Arabidopsis thaliana]
Length = 1865
Score = 198 bits (503), Expect = 4e-50
Identities = 97/125 (77%), Positives = 109/125 (86%), Gaps = 4/125 (3%)
Frame = -1
Query: 564 VDLDTEGRYLFLNAIANXLRYPDTHTHYFSFILLHLFAESNQEIIQEQITRVVLERLIVN 385
++LDTEGRYLFLNAIAN LRYP+ HTHYFSFI+L+LF ES+QEIIQEQITRV+LERLIVN
Sbjct: 1740 MELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQEIIQEQITRVLLERLIVN 1799
Query: 384 RPHPWGLLVTFIELVKNRMYSFWNRSFIRCAPEIEKLFESLFESVSRSCGGPKPVDE--- 214
RPHPWGLL+TFIEL+KN YSFW ++FIRCAPEIEK LFESV+RSCGG KPVDE
Sbjct: 1800 RPHPWGLLITFIELIKNPRYSFWKQAFIRCAPEIEK----LFESVARSCGGLKPVDEGMV 1855
Query: 213 -SGWV 202
GWV
Sbjct: 1856 SGGWV 1860
>gb|AAO22642.1| unknown protein [Arabidopsis thaliana]
Length = 682
Score = 198 bits (503), Expect = 4e-50
Identities = 97/125 (77%), Positives = 109/125 (86%), Gaps = 4/125 (3%)
Frame = -1
Query: 564 VDLDTEGRYLFLNAIANXLRYPDTHTHYFSFILLHLFAESNQEIIQEQITRVVLERLIVN 385
++LDTEGRYLFLNAIAN LRYP+ HTHYFSFI+L+LF ES+QEIIQEQITRV+LERLIVN
Sbjct: 557 MELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQEIIQEQITRVLLERLIVN 616
Query: 384 RPHPWGLLVTFIELVKNRMYSFWNRSFIRCAPEIEKLFESLFESVSRSCGGPKPVDE--- 214
RPHPWGLL+TFIEL+KN YSFW ++FIRCAPEIEK LFESV+RSCGG KPVDE
Sbjct: 617 RPHPWGLLITFIELIKNPRYSFWKQAFIRCAPEIEK----LFESVARSCGGLKPVDEGMV 672
Query: 213 -SGWV 202
GWV
Sbjct: 673 SGGWV 677
>ref|NP_171710.1| unknown protein; protein id: At1g02080.1 [Arabidopsis thaliana]
Length = 2226
Score = 198 bits (503), Expect = 4e-50
Identities = 97/125 (77%), Positives = 109/125 (86%), Gaps = 4/125 (3%)
Frame = -1
Query: 564 VDLDTEGRYLFLNAIANXLRYPDTHTHYFSFILLHLFAESNQEIIQEQITRVVLERLIVN 385
++LDTEGRYLFLNAIAN LRYP+ HTHYFSFI+L+LF ES+QEIIQEQITRV+LERLIVN
Sbjct: 2101 MELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQEIIQEQITRVLLERLIVN 2160
Query: 384 RPHPWGLLVTFIELVKNRMYSFWNRSFIRCAPEIEKLFESLFESVSRSCGGPKPVDE--- 214
RPHPWGLL+TFIEL+KN YSFW ++FIRCAPEIEK LFESV+RSCGG KPVDE
Sbjct: 2161 RPHPWGLLITFIELIKNPRYSFWKQAFIRCAPEIEK----LFESVARSCGGLKPVDEGMV 2216
Query: 213 -SGWV 202
GWV
Sbjct: 2217 SGGWV 2221
>gb|AAK55455.1|AC069300_10 putative transcription regulatory protein [Oryza sativa (japonica
cultivar-group)]
Length = 2363
Score = 184 bits (467), Expect = 7e-46
Identities = 87/112 (77%), Positives = 100/112 (88%)
Frame = -1
Query: 567 IVDLDTEGRYLFLNAIANXLRYPDTHTHYFSFILLHLFAESNQEIIQEQITRVVLERLIV 388
+++ DTEGRYL LNAIAN LRYP+ HTHYFSFI+L+LF+E+NQEI+QEQITRV+LERLIV
Sbjct: 2242 VMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFSEANQEIVQEQITRVLLERLIV 2301
Query: 387 NRPHPWGLLVTFIELVKNRMYSFWNRSFIRCAPEIEKLFESLFESVSRSCGG 232
NRPHPWGLL+TFIEL+KN YSFW RSF RCAPEIEK LFESV+RSCGG
Sbjct: 2302 NRPHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEK----LFESVARSCGG 2349
>ref|NP_724798.1| CG1884-PB [Drosophila melanogaster] gi|7303881|gb|AAF58926.1|
CG1884-PB [Drosophila melanogaster]
Length = 1766
Score = 175 bits (444), Expect = 3e-43
Identities = 83/109 (76%), Positives = 94/109 (86%)
Frame = -1
Query: 564 VDLDTEGRYLFLNAIANXLRYPDTHTHYFSFILLHLFAESNQEIIQEQITRVVLERLIVN 385
VDLDTEGRYLFLNAIAN LRYP++HTHYFS +LHLFAE+N E IQEQITRV+LERLIVN
Sbjct: 1636 VDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAEANSEAIQEQITRVLLERLIVN 1695
Query: 384 RPHPWGLLVTFIELVKNRMYSFWNRSFIRCAPEIEKLFESLFESVSRSC 238
RPHPWGLL+TFIEL+KN +Y FW+ F+ CAPEI K LFESV+RSC
Sbjct: 1696 RPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEITK----LFESVARSC 1740
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,425,675
Number of Sequences: 1393205
Number of extensions: 9461967
Number of successful extensions: 24736
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 23918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24684
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
