Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006280A_C01 KMC006280A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_783813.1| conserved membrane-spanning protein [Clostridiu... 37 0.14
gb|EAA32688.1| predicted protein [Neurospora crassa] 34 1.2
ref|NP_177582.1| xyloglucan fucosyltransferase, putative; protei... 33 2.6
ref|XP_235951.1| similar to pescadillo homolog 1, containing BRC... 31 7.5
ref|NP_659441.1| hypothetical protein MGC26899 [Homo sapiens] gi... 31 7.5
>ref|NP_783813.1| conserved membrane-spanning protein [Clostridium tetani]
gi|28208754|gb|AAO37436.1|AF528097_42 conserved
membrane-spanning protein [Clostridium tetani]
Length = 264
Score = 37.0 bits (84), Expect = 0.14
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 228 FVQSVYLTVMLQMFVCDDEHISLGILYVS--SPDDACVPSTCLYTIVFLIFISYTFI*SL 55
FV++ YL ++ FV I IL + P +PS +YT ++IFI + + L
Sbjct: 178 FVENKYLAIVFPFFVYSIPGILFPILGLDCFEPSTTFIPSANIYTKWYMIFIQQSILFIL 237
Query: 54 SLALFRCKIV 25
S +LF K++
Sbjct: 238 SASLFYIKVI 247
>gb|EAA32688.1| predicted protein [Neurospora crassa]
Length = 330
Score = 33.9 bits (76), Expect = 1.2
Identities = 19/41 (46%), Positives = 23/41 (55%)
Frame = -1
Query: 123 VPSTCLYTIVFLIFISYTFI*SLSLALFRCKIVY*IIVINF 1
VP CL+TI IF S T + SL +FR IVY I + F
Sbjct: 12 VPFLCLFTIPMAIFASITSALAFSLLMFRVAIVYVDIAMAF 52
>ref|NP_177582.1| xyloglucan fucosyltransferase, putative; protein id: At1g74420.1
[Arabidopsis thaliana] gi|25354687|pir||A96773
hypothetical protein F1M20.10 [imported] - Arabidopsis
thaliana gi|12324790|gb|AAG52352.1|AC011765_4 putative
xyloglucan fucosyltransferase; 26230-24341 [Arabidopsis
thaliana]
Length = 562
Score = 32.7 bits (73), Expect = 2.6
Identities = 28/77 (36%), Positives = 35/77 (45%)
Frame = -1
Query: 387 LFQSNR*TIIDSDEFLAHLGARTSNIRTYVSLTF*GRSCLGRKGARALLFDSPFVQSVYL 208
+ QS I+SD L+ A+ NI S F SCL R A +SPF QS YL
Sbjct: 114 VLQSRLHQAIESDGGLSEKKAQLGNINLVPS--FDKESCLSRYEASLYRKESPFKQSSYL 171
Query: 207 TVMLQMFVCDDEHISLG 157
LQ + +D H G
Sbjct: 172 DYRLQRY--EDLHRRCG 186
>ref|XP_235951.1| similar to pescadillo homolog 1, containing BRCT domain (zebrafish)
[Mus musculus] [Rattus norvegicus]
Length = 290
Score = 31.2 bits (69), Expect = 7.5
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -2
Query: 269 WGGKVQELYCSILLLYSLYILL*CFRCLYAMMNT------SLWEFCTFLLPMMPVCLQP 111
W GK +I L + L +L C CL AM + + EF TFLL + VCL P
Sbjct: 69 WMGKCHVQ--TIQLCHHLTVLALCHCCLRAMQDVDYRVMATFTEFYTFLLDFINVCLYP 125
>ref|NP_659441.1| hypothetical protein MGC26899 [Homo sapiens]
gi|20070980|gb|AAH26169.1| Similar to a disintegrin and
metalloproteinase domain 18 [Homo sapiens]
gi|20379571|gb|AAH28702.1| Unknown (protein for
MGC:26898) [Homo sapiens] gi|20988311|gb|AAH30014.1|
Unknown (protein for MGC:26906) [Homo sapiens]
gi|21265152|gb|AAH30698.1| Unknown (protein for
MGC:26855) [Homo sapiens] gi|22137793|gb|AAH34975.1|
hypothetical protein MGC26899 [Homo sapiens]
Length = 787
Score = 31.2 bits (69), Expect = 7.5
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -1
Query: 303 YVSLTF*GRSCLGRKGARALLFDSPFVQSVYLTVMLQMFVCDDEHISLGILYVSSPDDAC 124
Y+ F G C+ R A L+ + ++ QM +SLGI Y C
Sbjct: 285 YLGAVFPGTMCITRYSAGVALYPKEITLEAFAVIVTQMLA-----LSLGISYDDPKKCQC 339
Query: 123 VPSTCL 106
STC+
Sbjct: 340 SESTCI 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,792,387
Number of Sequences: 1393205
Number of extensions: 8511457
Number of successful extensions: 18660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18655
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
