Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006268A_C01 KMC006268A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680744.1| hypothetical protein; protein id: At4g27595.1 [... 61 9e-09
ref|NP_186943.1| unknown protein; protein id: At3g02930.1 [Arabi... 59 4e-08
ref|NP_197175.1| putative protein; protein id: At5g16730.1 [Arab... 53 2e-06
ref|NP_189177.1| expressed protein; protein id: At3g25500.1, sup... 48 8e-05
dbj|BAA90502.1| maize EST AI621709, similar to an Arabidopsis th... 48 1e-04
>ref|NP_680744.1| hypothetical protein; protein id: At4g27595.1 [Arabidopsis
thaliana]
Length = 1212
Score = 61.2 bits (147), Expect = 9e-09
Identities = 32/61 (52%), Positives = 46/61 (74%)
Frame = +1
Query: 331 NKASLATPRVSKVRKVVSKSQSDSPSPLQNSRPSVERSPRSVNSKPTVERKSPRPPSTPP 510
+K S TPRVSK V+KS +SPSP+Q++R S++RSP++VNSKP +R++ R P TPP
Sbjct: 6 SKPSPPTPRVSK--PTVTKSDGNSPSPVQSTRLSIDRSPQTVNSKPVSDRRTARVP-TPP 62
Query: 511 D 513
+
Sbjct: 63 E 63
>ref|NP_186943.1| unknown protein; protein id: At3g02930.1 [Arabidopsis thaliana]
gi|6728968|gb|AAF26966.1|AC018363_11 unknown protein
[Arabidopsis thaliana]
Length = 806
Score = 58.9 bits (141), Expect = 4e-08
Identities = 39/91 (42%), Positives = 58/91 (62%), Gaps = 2/91 (2%)
Frame = +1
Query: 292 MASKSRSNLSENP-NKASLATPRVSKVRKVVSKSQSDSPSPLQN-SRPSVERSPRSVNSK 465
MASK ++ LS+ K+S + RV ++ ++V+K S+SPSP Q SR S ER S NSK
Sbjct: 1 MASKIKNGLSDTTLRKSSSTSLRVPRLTRIVTKPDSNSPSPTQQQSRLSFERP--SSNSK 58
Query: 466 PTVERKSPRPPSTPPDKQAPKAEKGLELQNQ 558
P+ +++SP+ P TPP+K +A + E Q Q
Sbjct: 59 PSTDKRSPKAP-TPPEKTQIRAVRVSESQPQ 88
>ref|NP_197175.1| putative protein; protein id: At5g16730.1 [Arabidopsis thaliana]
gi|11357813|pir||T51505 hypothetical protein F5E19_70 -
Arabidopsis thaliana gi|9755725|emb|CAC01837.1| putative
protein [Arabidopsis thaliana]
Length = 853
Score = 53.1 bits (126), Expect = 2e-06
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 12/97 (12%)
Frame = +1
Query: 292 MASKSRSNLSENPN------KASLATPRVSKVRKVVSKSQS---DSPSPLQ-NSRPSVER 441
MASK++++LSE K+S ATPR++K + V+KS++ +SPS +SR S++R
Sbjct: 1 MASKTKTSLSETTTTTTPTGKSSPATPRIAK--RTVNKSETSNNNSPSTTTPHSRLSLDR 58
Query: 442 SPRSVNSKPTVERKSPRPPSTPPDKQAPK--AEKGLE 546
S S NSK +VER+SP+ P TPP+K + A KG E
Sbjct: 59 S--SPNSKSSVERRSPKLP-TPPEKSQARVAAVKGTE 92
>ref|NP_189177.1| expressed protein; protein id: At3g25500.1, supported by cDNA:
gi_19423898, supported by cDNA: gi_6503009 [Arabidopsis
thaliana] gi|6503010|gb|AAF14548.1| formin-like protein
AHF1 [Arabidopsis thaliana] gi|9279730|dbj|BAB01320.1|
formin-like protein [Arabidopsis thaliana]
gi|19423899|gb|AAL87275.1| putative formin protein AHF1
[Arabidopsis thaliana] gi|23296692|gb|AAN13148.1|
putative formin protein AHF1 [Arabidopsis thaliana]
Length = 1051
Score = 48.1 bits (113), Expect = 8e-05
Identities = 42/137 (30%), Positives = 68/137 (48%), Gaps = 2/137 (1%)
Frame = +1
Query: 106 SASSTPIFSFQQSLNLFTHSHPKILLGFLLSMSQL*HSQFCNCNSPFHQ-RHHL*RSETT 282
SAS++P FQ+S P++L F+ ++ Q SQ + S H + L + +
Sbjct: 406 SASTSPYRCFQKS--------PEVLPAFMSNLRQGLQSQLLSSPSNSHGGQGFLKQLDAL 457
Query: 283 SATMASKSRSNLSENPNKASLATPRVSKVRKVVSKSQSDSPSPLQNSRPSVERSPRSVNS 462
+ S S S++ +P KAS +P V+ + SQS S SP ++ S++ SPR N
Sbjct: 458 RSRSPSSSSSSVCSSPEKASHKSP-VTSPKLSSRNSQSLSSSPDRDFSHSLDVSPRISNI 516
Query: 463 KPTV-ERKSPRPPSTPP 510
P + + + P PP PP
Sbjct: 517 SPQILQSRVPPPPPPPP 533
Score = 36.2 bits (82), Expect = 0.30
Identities = 31/113 (27%), Positives = 51/113 (44%), Gaps = 8/113 (7%)
Frame = +1
Query: 232 CNSPFHQRHHL*RSETTSATMASKSRSNLSENPNKA---SL-ATPRVSKVRKVVSKSQSD 399
C+SP H +S TS ++S++ +LS +P++ SL +PR+S + + +S+
Sbjct: 470 CSSPEKASH---KSPVTSPKLSSRNSQSLSSSPDRDFSHSLDVSPRISNISPQILQSRVP 526
Query: 400 SPSPLQNSRPSVERSPRSVNSKPTVER-KSPRPPSTP---PDKQAPKAEKGLE 546
P P P R + T+ R S PPS P P + P +E
Sbjct: 527 PPPPPPPPLPLWGRRSQVTTKADTISRPPSLTPPSHPFVIPSENLPVTSSPME 579
>dbj|BAA90502.1| maize EST AI621709, similar to an Arabidopsis thialiana chromosome
BAC genomic sequence (AC006193); unknown protein [Oryza
sativa]
Length = 895
Score = 47.8 bits (112), Expect = 1e-04
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Frame = +1
Query: 385 KSQSDSPSPLQNSRP--SVERSPRSVNSKPTVERKSPRPPSTPPDKQAPKAEKGLE 546
KS+ +SP P +RP S +RSPRSV+SKP VER+ P+ TPPDKQ P+ E L+
Sbjct: 80 KSEPNSP-PSATARPRLSFDRSPRSVDSKPVVERRVPK-IGTPPDKQ-PRKEAELQ 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,020,301
Number of Sequences: 1393205
Number of extensions: 11120593
Number of successful extensions: 58932
Number of sequences better than 10.0: 633
Number of HSP's better than 10.0 without gapping: 47151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56471
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
