Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006253A_C01 KMC006253A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199081.1| unknown protein; protein id: At5g42670.1 [Arabi... 47 1e-04
ref|NP_200020.2| unknown protein; protein id: At5g52070.1, suppo... 40 0.012
dbj|BAB11055.1| gene_id:MSG15.17~unknown protein [Arabidopsis th... 40 0.012
ref|ZP_00117471.1| hypothetical protein [Cytophaga hutchinsonii] 36 0.29
ref|NP_785028.1| D-alanyl carrier protein DltC [Lactobacillus pl... 34 0.86
>ref|NP_199081.1| unknown protein; protein id: At5g42670.1 [Arabidopsis thaliana]
gi|10177270|dbj|BAB10623.1| gene_id:MJB21.4~unknown
protein [Arabidopsis thaliana]
Length = 294
Score = 47.0 bits (110), Expect = 1e-04
Identities = 23/72 (31%), Positives = 43/72 (58%)
Frame = -1
Query: 484 ENSERVAMNSGYNDEYPAKRMRNIRSICLNSMSSNTIEAAILDLEELVNRIRWLRNMLNL 305
E +R A + P +++++ ++ LN M S +IEAA+LDLEE++ R WL+++L
Sbjct: 215 EEKQRGAEPKEEEKQRPTEKLKSDEALQLNIMDSESIEAAVLDLEEMIVRFEWLKDILT- 273
Query: 304 GVPLSGTKRSSW 269
++++SW
Sbjct: 274 ---PDSSEKNSW 282
>ref|NP_200020.2| unknown protein; protein id: At5g52070.1, supported by cDNA:
gi_19347820 [Arabidopsis thaliana]
gi|19347821|gb|AAL86323.1| unknown protein [Arabidopsis
thaliana] gi|21436381|gb|AAM51360.1| unknown protein
[Arabidopsis thaliana]
Length = 271
Score = 40.4 bits (93), Expect = 0.012
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -1
Query: 430 KRMRNIRSICLNSMSSNTIEAAILDLEELVNRIRWLRNMLNLGVPLSGTKRSSWEILHHA 251
K++ + LN M S+ IEAA+LD+EEL+ RI W + +L V G K SW+ +
Sbjct: 208 KQVEGNEGLRLNIMESDGIEAAVLDIEELIVRIDWFKGILKPDVG-EGAK-CSWKYEDYR 265
Query: 250 P 248
P
Sbjct: 266 P 266
>dbj|BAB11055.1| gene_id:MSG15.17~unknown protein [Arabidopsis thaliana]
Length = 222
Score = 40.4 bits (93), Expect = 0.012
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -1
Query: 430 KRMRNIRSICLNSMSSNTIEAAILDLEELVNRIRWLRNMLNLGVPLSGTKRSSWEILHHA 251
K++ + LN M S+ IEAA+LD+EEL+ RI W + +L V G K SW+ +
Sbjct: 159 KQVEGNEGLRLNIMESDGIEAAVLDIEELIVRIDWFKGILKPDVG-EGAK-CSWKYEDYR 216
Query: 250 P 248
P
Sbjct: 217 P 217
>ref|ZP_00117471.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 740
Score = 35.8 bits (81), Expect = 0.29
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -2
Query: 243 DDFRKMQDLSVYRLCFQTFSCCKSCLDSESLYNGEWDHASLTKTTYYYSV 94
+D+ +++DL + ++C + + S + YN +W++ SL YYYS+
Sbjct: 674 NDYFEIKDLQYNTYSLKVYNCWGALVYSNNNYNNDWNNDSLADGVYYYSL 723
>ref|NP_785028.1| D-alanyl carrier protein DltC [Lactobacillus plantarum WCFS1]
gi|28270971|emb|CAD63875.1| D-alanyl carrier protein
DltC [Lactobacillus plantarum WCFS1]
Length = 80
Score = 34.3 bits (77), Expect = 0.86
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 397 NSMSSNTIEAAILDLEELVNRIRWLRNMLNLGVPLSGTKRSSWE 266
N+M +N + ILD V + L+N L + VP+S +RS WE
Sbjct: 24 NNMDANLFDEGILDSMGSVQLLLELQNQLGIEVPVSEFERSEWE 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,505,921
Number of Sequences: 1393205
Number of extensions: 8782755
Number of successful extensions: 18803
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18797
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
