Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006242A_C01 KMC006242A_c01
(940 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173520.1| U5 small nuclear ribonucleoprotein helicase, pu... 508 e-152
ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase, pu... 483 e-144
dbj|BAA34508.2| KIAA0788 protein [Homo sapiens] 403 e-118
sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa ... 403 e-118
ref|XP_181389.2| U5 snRNP-specific protein, 200 kDa [Mus musculus] 403 e-118
>ref|NP_173520.1| U5 small nuclear ribonucleoprotein helicase, putative; protein id:
At1g20960.1 [Arabidopsis thaliana]
gi|25518570|pir||E86342 hypothetical protein F9H16.5
[imported] - Arabidopsis thaliana
gi|4836892|gb|AAD30595.1|AC007369_5 Putative RNA helicase
[Arabidopsis thaliana]
Length = 2171
Score = 508 bits (1308), Expect(2) = e-152
Identities = 240/285 (84%), Positives = 264/285 (92%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
+RAL+EIVLKRGWAQLAEKALNL KMV KRMWSVQTPLRQF+G+ +D+L +LEKKDL WE
Sbjct: 1116 VRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWE 1175
Query: 265 RYYDLSPQEISELIRATKMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPDFAWD 444
RYYDLS QE+ ELIR+ KMG+ LHKFIHQFPK+ L+AHVQPITRTVL VELT+TPDF WD
Sbjct: 1176 RYYDLSAQELGELIRSPKMGKPLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWD 1235
Query: 445 DNIHGYVEPFWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFICVV 624
+ IH YVEPFW+IVEDNDGE ILHHEYFLLKKQYIDEDHTL+FTVPI+EPLPPQYF+ VV
Sbjct: 1236 EKIHKYVEPFWIIVEDNDGEKILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVV 1295
Query: 625 SDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQVFKHFNPVQ 804
SDKWLGS+TVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNP+YE LYQ FKHFNPVQ
Sbjct: 1296 SDKWLGSETVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQ 1355
Query: 805 TQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQKVPDSVMR 939
TQVFTVLYN++DNVLVAAPTGSGKTICAEFAILRNH + PD+ MR
Sbjct: 1356 TQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMR 1400
Score = 54.3 bits (129), Expect(2) = e-152
Identities = 27/28 (96%), Positives = 28/28 (99%)
Frame = +2
Query: 2 QAYISQLKLEGLSLTSDMVFITQSAGRL 85
QAYISQLKLEGLSLTSDMV+ITQSAGRL
Sbjct: 1088 QAYISQLKLEGLSLTSDMVYITQSAGRL 1115
Score = 47.4 bits (111), Expect = 3e-04
Identities = 48/204 (23%), Positives = 82/204 (39%), Gaps = 18/204 (8%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKL-EKKDLAW 261
L+A+ +++ GW LA A+ + +MVT+ MW + L Q D+ + E
Sbjct: 1950 LQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNI 2009
Query: 262 ERYYDLSPQEISELIRATKMGRT----LHKFIHQFPKLNLAAHVQPITRTVLGVELTITP 429
E +DL E E KM + +F ++FP ++L + G E+T+
Sbjct: 2010 ETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQV 2069
Query: 430 DFAWDDNIHGYVEP-------------FWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLN 570
D V P +W++V D +L + L+++ L+
Sbjct: 2070 MLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGDTKTNQLLAIKRVSLQRKV---KVKLD 2126
Query: 571 FTVPIYEPLPPQYFICVVSDKWLG 642
FT P EP Y + + D +LG
Sbjct: 2127 FTAP-SEPGEKSYTLYFMCDSYLG 2149
Score = 35.4 bits (80), Expect = 1.3
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 754 PSYEALYQVFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILR 906
P+++ + Q+ N VQ++V+ +N+L+ APTG+GKT A IL+
Sbjct: 497 PAFKGMQQL----NRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQ 543
>ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase, putative; protein id:
At2g42270.1 [Arabidopsis thaliana] gi|7484814|pir||T00936
probable ATP-dependent RNA helicase At2g42270 [imported]
- Arabidopsis thaliana gi|2673917|gb|AAB88651.1| putative
ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 2172
Score = 483 bits (1243), Expect(2) = e-144
Identities = 234/285 (82%), Positives = 251/285 (87%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
LRA+FEIVLKRGWAQL++KALNL KMV KRMWSVQTPL QF GIP ++L KLEK DL WE
Sbjct: 1117 LRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWE 1176
Query: 265 RYYDLSPQEISELIRATKMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPDFAWD 444
RYYDLS QE+ ELI KMGR LHK+IHQFPKL LAAHVQPI+R+VL VELT+TPDF WD
Sbjct: 1177 RYYDLSSQELGELICNPKMGRPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWD 1236
Query: 445 DNIHGYVEPFWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFICVV 624
D + YVEPFW+IVEDNDGE ILHHEYFL KK+ IDEDHTLNFTVPI EP+PPQYFI VV
Sbjct: 1237 DKANKYVEPFWIIVEDNDGEKILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVV 1296
Query: 625 SDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQVFKHFNPVQ 804
SDKWL S TVLPVSFRHLILPEKYPPPTELLDLQPLPV ALRNPSYE LYQ FKHFNPVQ
Sbjct: 1297 SDKWLDSPTVLPVSFRHLILPEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQ 1356
Query: 805 TQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQKVPDSVMR 939
TQVFTVLYN+ DNV+VAAPTGSGKTICAEFAILRNH + PDS MR
Sbjct: 1357 TQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMR 1401
Score = 51.2 bits (121), Expect(2) = e-144
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +2
Query: 2 QAYISQLKLEGLSLTSDMVFITQSAGRL 85
Q YIS+LKLEGLSLTSDMV+ITQSAGRL
Sbjct: 1089 QVYISKLKLEGLSLTSDMVYITQSAGRL 1116
Score = 38.9 bits (89), Expect = 0.11
Identities = 24/72 (33%), Positives = 39/72 (53%)
Frame = +1
Query: 688 EKYPPPTELLDLQPLPVTALRNPSYEALYQVFKHFNPVQTQVFTVLYNSDDNVLVAAPTG 867
+K+ +L+ + LP A P++ + Q+ N VQ++V+ DN+L+ APTG
Sbjct: 478 KKFDSNEKLVKISDLPEWA--QPAFRGMQQL----NRVQSKVYGTALFKADNILLCAPTG 531
Query: 868 SGKTICAEFAIL 903
+GKT A IL
Sbjct: 532 AGKTNVAVLTIL 543
Score = 34.3 bits (77), Expect = 2.8
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKL-EKKDLAW 261
L+A+ +++ G LA A+ + +MVT+ MW + L Q D+ + E
Sbjct: 1951 LQAMVDVISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQLPHFTKDLAKRCHENPGNNI 2010
Query: 262 ERYYDLSPQEISELIRATKMGRT----LHKFIHQFPKLNLAAHVQPITRTVLGVELTI 423
E +DL E + +M + +F ++FP ++L + G ++T+
Sbjct: 2011 ETIFDLVEMEDDKRQELLQMSDAQLLDIARFCNRFPNIDLTYEIVGSNEVSPGKDITL 2068
>dbj|BAA34508.2| KIAA0788 protein [Homo sapiens]
Length = 2026
Score = 403 bits (1035), Expect(2) = e-118
Identities = 187/275 (68%), Positives = 223/275 (81%), Gaps = 1/275 (0%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
+RA+FEIVL RGWAQL +K LNLCKM+ KRMW PLRQF +P +V+ K+EKK+ +E
Sbjct: 982 MRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFE 1041
Query: 265 RYYDLSPQEISELIRATKMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPDFAWD 444
R YDL+ EI ELIR KMG+T+HK++H FPKL L+ H+QPITR+ L VELTITPDF WD
Sbjct: 1042 RLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWD 1101
Query: 445 DNIHGYVEPFWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFICVV 624
+ +HG E FW++VED D E ILHHEYFLLK +Y ++H + F VP++EPLPPQYFI VV
Sbjct: 1102 EKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVV 1161
Query: 625 SDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQ-VFKHFNPV 801
SD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN ++E+LYQ F FNP+
Sbjct: 1162 SDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPI 1221
Query: 802 QTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILR 906
QTQVF +YNSDDNV V APTGSGKTICAEFAILR
Sbjct: 1222 QTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 1256
Score = 46.2 bits (108), Expect(2) = e-118
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = +2
Query: 2 QAYISQLKLEGLSLTSDMVFITQSAGRL 85
QA+ISQLKLEG +L +DMV++TQSAGRL
Sbjct: 954 QAFISQLKLEGFALMADMVYVTQSAGRL 981
Score = 45.1 bits (105), Expect = 0.002
Identities = 24/74 (32%), Positives = 43/74 (57%)
Frame = +1
Query: 685 PEKYPPPTELLDLQPLPVTALRNPSYEALYQVFKHFNPVQTQVFTVLYNSDDNVLVAAPT 864
P+ + +LL ++ LP A +A ++ FK N +Q++++ +D+N+L+ APT
Sbjct: 342 PKPFGSEEQLLPVEKLPKYA------QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPT 395
Query: 865 GSGKTICAEFAILR 906
G+GKT A +LR
Sbjct: 396 GAGKTNVALMCMLR 409
Score = 41.2 bits (95), Expect = 0.023
Identities = 41/200 (20%), Positives = 85/200 (42%), Gaps = 14/200 (7%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
++A +++ GW A A+ L +MVT+ MWS + L+Q S+ + + K + E
Sbjct: 1813 IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--E 1870
Query: 265 RYYDLSPQEISE---LIRAT-KMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPD 432
+D+ E E L++ T + +F +++P + L+ V G + +
Sbjct: 1871 SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ 1930
Query: 433 FAWDDNIHGYV----------EPFWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLNFTVP 582
++ + G V E +WV++ D ++ + L+++ L+F P
Sbjct: 1931 LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFVAP 1987
Query: 583 IYEPLPPQYFICVVSDKWLG 642
Y + +SD ++G
Sbjct: 1988 ATG--AHNYTLYFMSDAYMG 2005
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase (U5
snRNP-specific 200 kDa protein) (U5-200KD)
gi|3255965|emb|CAA94089.1| U5 snRNP-specific 200kD
protein [Homo sapiens]
Length = 1701
Score = 403 bits (1035), Expect(2) = e-118
Identities = 187/275 (68%), Positives = 223/275 (81%), Gaps = 1/275 (0%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
+RA+FEIVL RGWAQL +K LNLCKM+ KRMW PLRQF +P +V+ K+EKK+ +E
Sbjct: 657 MRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFE 716
Query: 265 RYYDLSPQEISELIRATKMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPDFAWD 444
R YDL+ EI ELIR KMG+T+HK++H FPKL L+ H+QPITR+ L VELTITPDF WD
Sbjct: 717 RLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWD 776
Query: 445 DNIHGYVEPFWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFICVV 624
+ +HG E FW++VED D E ILHHEYFLLK +Y ++H + F VP++EPLPPQYFI VV
Sbjct: 777 EKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVV 836
Query: 625 SDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQ-VFKHFNPV 801
SD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN ++E+LYQ F FNP+
Sbjct: 837 SDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPI 896
Query: 802 QTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILR 906
QTQVF +YNSDDNV V APTGSGKTICAEFAILR
Sbjct: 897 QTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 931
Score = 46.2 bits (108), Expect(2) = e-118
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = +2
Query: 2 QAYISQLKLEGLSLTSDMVFITQSAGRL 85
QA+ISQLKLEG +L +DMV++TQSAGRL
Sbjct: 629 QAFISQLKLEGFALMADMVYVTQSAGRL 656
Score = 45.1 bits (105), Expect = 0.002
Identities = 24/74 (32%), Positives = 43/74 (57%)
Frame = +1
Query: 685 PEKYPPPTELLDLQPLPVTALRNPSYEALYQVFKHFNPVQTQVFTVLYNSDDNVLVAAPT 864
P+ + +LL ++ LP A +A ++ FK N +Q++++ +D+N+L+ APT
Sbjct: 17 PKPFGSEEQLLPVEKLPKYA------QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPT 70
Query: 865 GSGKTICAEFAILR 906
G+GKT A +LR
Sbjct: 71 GAGKTNVALMCMLR 84
Score = 43.1 bits (100), Expect = 0.006
Identities = 34/150 (22%), Positives = 66/150 (43%), Gaps = 14/150 (9%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
++A +++ GW A A+ L +MVT+ MWS + LR+ PS + + K + E
Sbjct: 1488 IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSEDSYLRRLPPFPSGLFKRCTDKGV--E 1545
Query: 265 RYYDLSPQEISE---LIRAT-KMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPD 432
+D+ E E L++ T + +F +++P + L+ V G + +
Sbjct: 1546 SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ 1605
Query: 433 FAWDDNIHGYV----------EPFWVIVED 492
++ + G V E +WV++ D
Sbjct: 1606 LEREEEVTGPVIAPLFPQKREEGWWVVIGD 1635
>ref|XP_181389.2| U5 snRNP-specific protein, 200 kDa [Mus musculus]
Length = 1622
Score = 403 bits (1035), Expect(2) = e-118
Identities = 187/275 (68%), Positives = 223/275 (81%), Gaps = 1/275 (0%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
+RA+FEIVL RGWAQL +K LNLCKM+ KRMW PLRQF +P +V+ K+EKK+ +E
Sbjct: 578 MRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFE 637
Query: 265 RYYDLSPQEISELIRATKMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPDFAWD 444
R YDL+ EI ELIR KMG+T+HK++H FPKL L+ H+QPITR+ L VELTITPDF WD
Sbjct: 638 RLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWD 697
Query: 445 DNIHGYVEPFWVIVEDNDGEYILHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFICVV 624
+ +HG E FW++VED D E ILHHEYFLLK +Y ++H + F VP++EPLPPQYFI VV
Sbjct: 698 EKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVV 757
Query: 625 SDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQ-VFKHFNPV 801
SD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN ++E+LYQ F FNP+
Sbjct: 758 SDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPI 817
Query: 802 QTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILR 906
QTQVF +YNSDDNV V APTGSGKTICAEFAILR
Sbjct: 818 QTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 852
Score = 46.2 bits (108), Expect(2) = e-118
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = +2
Query: 2 QAYISQLKLEGLSLTSDMVFITQSAGRL 85
QA+ISQLKLEG +L +DMV++TQSAGRL
Sbjct: 550 QAFISQLKLEGFALMADMVYVTQSAGRL 577
Score = 40.8 bits (94), Expect = 0.030
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Frame = +1
Query: 85 LRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWE 264
++A +++ GW A A+ L +MVT+ MWS + L+Q S+ + + K + E
Sbjct: 1409 IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--E 1466
Query: 265 RYYDLSPQEISE---LIRAT-KMGRTLHKFIHQFPKLNLAAHVQPITRTVLGVELTITPD 432
+D+ E E L++ T + +F +++P + L+ V G + +
Sbjct: 1467 SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ 1526
Query: 433 FAWDDNIHGYV----------EPFWVIVED 492
++ + G V E +WV++ D
Sbjct: 1527 LEREEEVTGPVIAPLFPQKREEGWWVVIGD 1556
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 847,798,166
Number of Sequences: 1393205
Number of extensions: 20272354
Number of successful extensions: 59338
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 55330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59096
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52414431048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
