Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006238A_C01 KMC006238A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B84476 probable TPR repeat nuclear phosphoprotein [imported... 110 2e-23
dbj|BAC65935.1| putative TPR-containing nuclear phosphoprotein [... 98 7e-20
dbj|BAC16228.1| putative TPR-containing nuclear phosphoprotein [... 98 7e-20
ref|XP_207711.1| hypothetical protein XP_207711 [Mus musculus] 59 4e-08
ref|NP_702697.1| hypothetical protein [Plasmodium falciparum 3D7... 55 9e-07
>pir||B84476 probable TPR repeat nuclear phosphoprotein [imported] - Arabidopsis
thaliana gi|20197768|gb|AAM15237.1| putative TPR repeat
nuclear phosphoprotein [Arabidopsis thaliana]
Length = 1115
Score = 110 bits (274), Expect = 2e-23
Identities = 62/156 (39%), Positives = 99/156 (62%), Gaps = 7/156 (4%)
Frame = -1
Query: 609 RRERSDDEEGGT--GEKKKRKGGKRRKKDKHSKSRY--DTEEPEADMMDEQEMEDEDADV 442
R++R +D++G + E++++KGGKRRKKDK S++R+ D EE A M D E+EDEDA+
Sbjct: 960 RKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANT 1019
Query: 441 NYREEPQ---TQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDE 271
NY E + + + V+++AH LLAAAGLED D +++ P+S + RRR+ALS SD++
Sbjct: 1020 NYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVDDD-EVPTSGV-RRRRALSSSDEEG 1077
Query: 270 PLQRQSSPVRENSVDMQLSDGEIRDEDKTNGDDASD 163
L +S P + + S+GE D + ++ +
Sbjct: 1078 ELMEESHPNSSPQKEKEESNGEAGDPNMEEEEEEEE 1113
>dbj|BAC65935.1| putative TPR-containing nuclear phosphoprotein [Oryza sativa
(japonica cultivar-group)]
Length = 1056
Score = 98.2 bits (243), Expect = 7e-20
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = -1
Query: 606 RERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDADVNYREE 427
R + +DEEGG GEK+++KGG+RRK D+ +K+ Y EE E + DE E ED+ Y
Sbjct: 935 RSKHEDEEGG-GEKRRKKGGRRRK-DQKTKAHYGEEE-EDEYRDEPEAEDD-----YANT 986
Query: 426 PQTQMNDDVEENAHGLLAAAGLEDSDAEEETAA-PSSNIARRRQALSESDDDEPLQRQSS 250
++ D E+ LLAAAGLEDSDAEE+ P S I R+R+A SES+DDEP+QR
Sbjct: 987 ARSNDGGDSEKAPGHLLAAAGLEDSDAEEDDMGHPQSAIERKRRAWSESEDDEPVQR--- 1043
Query: 249 PVRENSVDMQLSD 211
PV+ ++ + LSD
Sbjct: 1044 PVQPSAGENDLSD 1056
>dbj|BAC16228.1| putative TPR-containing nuclear phosphoprotein [Oryza sativa
(japonica cultivar-group)]
Length = 1069
Score = 98.2 bits (243), Expect = 7e-20
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = -1
Query: 606 RERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDADVNYREE 427
R + +DEEGG GEK+++KGG+RRK D+ +K+ Y EE E + DE E ED+ Y
Sbjct: 948 RSKHEDEEGG-GEKRRKKGGRRRK-DQKTKAHYGEEE-EDEYRDEPEAEDD-----YANT 999
Query: 426 PQTQMNDDVEENAHGLLAAAGLEDSDAEEETAA-PSSNIARRRQALSESDDDEPLQRQSS 250
++ D E+ LLAAAGLEDSDAEE+ P S I R+R+A SES+DDEP+QR
Sbjct: 1000 ARSNDGGDSEKAPGHLLAAAGLEDSDAEEDDMGHPQSAIERKRRAWSESEDDEPVQR--- 1056
Query: 249 PVRENSVDMQLSD 211
PV+ ++ + LSD
Sbjct: 1057 PVQPSAGENDLSD 1069
>ref|XP_207711.1| hypothetical protein XP_207711 [Mus musculus]
Length = 171
Score = 59.3 bits (142), Expect = 4e-08
Identities = 37/134 (27%), Positives = 63/134 (46%), Gaps = 5/134 (3%)
Frame = -1
Query: 609 RRERSDDEEGGTG-----EKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDAD 445
RR R ++EEGG G KK+ +GG+RRKK++ + + EE E + +E+E E E
Sbjct: 41 RRRRREEEEGGGGGGGRRRKKEEEGGRRRKKEEEEEEEEEEEEEEEE--EEEEKEKEKEK 98
Query: 444 VNYREEPQTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDEPL 265
EE + + ++ EE G G + + EEE + E +++E
Sbjct: 99 EKKEEEEEEEEEEEEEEEGEGEGEGEGEGEGEGEEEEEEEEEEEEEEEEEEEEEEEEEEE 158
Query: 264 QRQSSPVRENSVDM 223
+++ E VD+
Sbjct: 159 EKKEEE-EEKVVDL 171
Score = 39.3 bits (90), Expect = 0.041
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 24/152 (15%)
Frame = -1
Query: 570 EKKKRK------------------------GGKRRKKDKHSKSRYDTEEPEADMMDEQEM 463
E+K+R+ GG+RRKK++ R EE E + +E+E
Sbjct: 25 ERKRRRRRRRRRRRRRRRRRREEEEGGGGGGGRRRKKEEEGGRRRKKEEEEEEEEEEEEE 84
Query: 462 EDEDADVNYREEPQTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSES 283
E+E+ + +E+ + + ++ EE E+ + EEE + E
Sbjct: 85 EEEEEEEKEKEKEKEKKEEEEEE-----------EEEEEEEEEGEGEGEGEGEGEGEGEE 133
Query: 282 DDDEPLQRQSSPVRENSVDMQLSDGEIRDEDK 187
+++E + + E + + + E ++E++
Sbjct: 134 EEEEEEEEEEEEEEEEEEEEEEEEEEKKEEEE 165
>ref|NP_702697.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498163|emb|CAD49135.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 639
Score = 54.7 bits (130), Expect = 9e-07
Identities = 36/146 (24%), Positives = 64/146 (43%)
Frame = -1
Query: 609 RRERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDADVNYRE 430
R+ +E T +KK K+RKK+ + ++E + DE+E EDED + +
Sbjct: 104 RKNSFAEETKKTIQKKSNVKEKKRKKELKKNKKVTSDENVRNAEDEEEEEDEDEEEEEED 163
Query: 429 EPQTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDEPLQRQSS 250
E + + +D EE ED + E+E + + E +D+E + +
Sbjct: 164 EEEEEEEEDEEEEDE--------EDEEEEDEEDEEEEDEEDEDEEDEEDEDEEDEEDEDE 215
Query: 249 PVRENSVDMQLSDGEIRDEDKTNGDD 172
E + D DGE D+++ + DD
Sbjct: 216 EDEEENDDNGNDDGEENDDNEKDDDD 241
Score = 54.3 bits (129), Expect = 1e-06
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Frame = -1
Query: 603 ERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMED------EDADV 442
+ ++EE E+++ + ++D+ + D EE + + DE++ ED ED D
Sbjct: 156 DEEEEEEDEEEEEEEEDEEEEDEEDEEEEDEEDEEEEDEEDEDEEDEEDEDEEDEEDEDE 215
Query: 441 NYREEPQTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDEPLQ 262
EE NDD EEN E+ D EEE N E+DD+E
Sbjct: 216 EDEEENDDNGNDDGEENDDNEKDDDD-EEKDDEEENDDDEENDDDENDDDVENDDNENDD 274
Query: 261 RQSSPVRENSVDMQLSDGEIRDEDKTNGDD 172
+ + EN D++ D D+D+ N DD
Sbjct: 275 DEENNDNENDDDVENDDDVENDDDEENDDD 304
Score = 53.1 bits (126), Expect = 3e-06
Identities = 41/147 (27%), Positives = 63/147 (41%)
Frame = -1
Query: 603 ERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDADVNYREEP 424
E ++EE E+++ + + + ++ + + +E E D DE E ++ED D EE
Sbjct: 162 EDEEEEEEEEDEEEEDEEDEEEEDEEDEEEEDEEDEDEEDEEDEDEEDEEDEDEEDEEEN 221
Query: 423 QTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDEPLQRQSSPV 244
NDD EEN E D +EE N E+DDDE +
Sbjct: 222 DDNGNDDGEENDDN-------EKDDDDEEKDDEEEN-----DDDEENDDDENDDDVENDD 269
Query: 243 RENSVDMQLSDGEIRDEDKTNGDDASD 163
EN D + +D E D+D N DD +
Sbjct: 270 NENDDDEENNDNE-NDDDVENDDDVEN 295
Score = 46.2 bits (108), Expect = 3e-04
Identities = 33/147 (22%), Positives = 62/147 (41%)
Frame = -1
Query: 603 ERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDADVNYREEP 424
E DDEE E + D ++ + + + + D+ E +D++ + + E
Sbjct: 249 ENDDDEENDDDENDDDVENDDNENDDDEENNDNENDDDVENDDDVENDDDEENDDDEEND 308
Query: 423 QTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDEPLQRQSSPV 244
+ NDD EEN +E+ D EE ++ E+DDDE ++
Sbjct: 309 DDEENDDDEENDD------DVENDDDEENDDDEENDDDEENDDDEENDDDE----ENDDN 358
Query: 243 RENSVDMQLSDGEIRDEDKTNGDDASD 163
EN + + D E D+++ + D+ +D
Sbjct: 359 EENDDNEENDDNEENDDNENDDDEEND 385
Score = 44.3 bits (103), Expect = 0.001
Identities = 32/144 (22%), Positives = 59/144 (40%)
Frame = -1
Query: 603 ERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRYDTEEPEADMMDEQEMEDEDADVNYREEP 424
E +++E E+ + + + + ++ + D + + D+ E +D+D + + EE
Sbjct: 191 EEDEEDEDEEDEEDEDEEDEEDEDEEDEEENDDNGNDDGEENDDNEKDDDDEEKDDEEE- 249
Query: 423 QTQMNDDVEENAHGLLAAAGLEDSDAEEETAAPSSNIARRRQALSESDDDEPLQRQSSPV 244
NDD EEN D D ++ N DD+E ++
Sbjct: 250 ----NDDDEEN-----------DDDENDDDVENDDN--------ENDDDEENNDNENDDD 286
Query: 243 RENSVDMQLSDGEIRDEDKTNGDD 172
EN D++ D E D+D+ N DD
Sbjct: 287 VENDDDVENDDDEENDDDEENDDD 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,400,710
Number of Sequences: 1393205
Number of extensions: 12060029
Number of successful extensions: 106834
Number of sequences better than 10.0: 2538
Number of HSP's better than 10.0 without gapping: 59998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85281
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
