Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006237A_C01 KMC006237A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565714.1| expressed protein; protein id: At2g31090.1, sup... 79 5e-14
gb|AAO52575.1| hypothetical protein [Dictyostelium discoideum] 37 0.14
gb|AAB67271.1| pre-pro-protease 3 [Mus musculus] 37 0.18
ref|XP_234882.1| similar to proteinase 3 [Rattus norvegicus] 37 0.18
gb|AAB58055.1| pre-pro-proteinase 3 [Mus musculus] 37 0.18
>ref|NP_565714.1| expressed protein; protein id: At2g31090.1, supported by cDNA:
10986. [Arabidopsis thaliana] gi|20197329|gb|AAC63841.2|
expressed protein [Arabidopsis thaliana]
gi|21536740|gb|AAM61072.1| unknown [Arabidopsis
thaliana]
Length = 75
Score = 78.6 bits (192), Expect = 5e-14
Identities = 34/63 (53%), Positives = 47/63 (73%)
Frame = -1
Query: 411 IGLDL*FNENIKKIKTLLLKICRLLLTCICPCCLCLTLIVEFALELVKAPLHVMEWFTSQ 232
+GL F + I +++ I LLL+CICPCCLC+T++VE A+ L+KAP+HVMEWF S+
Sbjct: 13 LGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHVMEWFMSK 72
Query: 231 IPC 223
IPC
Sbjct: 73 IPC 75
>gb|AAO52575.1| hypothetical protein [Dictyostelium discoideum]
Length = 1438
Score = 37.4 bits (85), Expect = 0.14
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 77 EITRSQKLENYVIFPSQHIKKR---RHHHHHQSTIQIPV*HALSDTIRESTQQGI*EVNH 247
+IT Y+I S KK+ HHHHH S ++ + ++ +IR ++ I NH
Sbjct: 461 KITSQYYSTEYLINNSSDFKKKSSGHHHHHHSSNGEVSLNSSVDFSIRSNSSSNINSFNH 520
Query: 248 SMTCKGALTNSKANS 292
G L NSK S
Sbjct: 521 KELNNG-LNNSKEGS 534
>gb|AAB67271.1| pre-pro-protease 3 [Mus musculus]
Length = 253
Score = 37.0 bits (84), Expect = 0.18
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
Frame = -3
Query: 352 NL*VVAYM---HMPLLLMPHINSGVCFGVSQGSLACHGVVHLSDSLLSAFANCIRKC 191
N+ VV ++ H L+P +G+CFG S G L C+G++H DS + IR+C
Sbjct: 175 NVTVVTFLCREHNVCTLVPRRAAGICFGDSGGPLICNGILHGVDSFV------IREC 225
>ref|XP_234882.1| similar to proteinase 3 [Rattus norvegicus]
Length = 244
Score = 37.0 bits (84), Expect = 0.18
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
Frame = -3
Query: 352 NL*VVAYM---HMPLLLMPHINSGVCFGVSQGSLACHGVVHLSDSLLSAFANCIRKC 191
N+ VV ++ H L+P +G+CFG S G L C+G++H DS + IR+C
Sbjct: 166 NVTVVTFLCREHNVCTLVPRRAAGICFGDSGGPLICNGILHGVDSFV------IREC 216
>gb|AAB58055.1| pre-pro-proteinase 3 [Mus musculus]
Length = 254
Score = 37.0 bits (84), Expect = 0.18
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
Frame = -3
Query: 352 NL*VVAYM---HMPLLLMPHINSGVCFGVSQGSLACHGVVHLSDSLLSAFANCIRKC 191
N+ VV ++ H L+P +G+CFG S G L C+G++H DS + IR+C
Sbjct: 176 NVTVVTFLCREHNVCTLVPRRAAGICFGDSGGPLICNGILHGVDSFV------IREC 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,203,223
Number of Sequences: 1393205
Number of extensions: 11957104
Number of successful extensions: 43613
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 37216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42009
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
