Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006236A_C01 KMC006236A_c01
(438 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_141020.1| similar to fibrous sheath-interacting protein 2... 33 0.80
ref|XP_211095.1| hypothetical protein XP_211095 [Homo sapiens] 31 4.0
dbj|BAB21849.1| KIAA1758 protein [Homo sapiens] 30 5.2
ref|NP_219499.1| cortactin binding protein 2; cortactin-binding ... 30 5.2
pir||T03505 nitrogen fixation positive activator protein homolog... 30 5.2
>ref|XP_141020.1| similar to fibrous sheath-interacting protein 2 [Mus musculus]
Length = 6781
Score = 33.1 bits (74), Expect = 0.80
Identities = 20/62 (32%), Positives = 31/62 (49%)
Frame = +1
Query: 184 HNMVGTGLFKKRKSRKWSHSHISSDLASPMGHTAVARWSLPPSGSIEGDPFKAEVEALKL 363
H++V T L++ KS++ H SSD +S + PSGS E P + L+L
Sbjct: 2380 HSVVVTSLYRNNKSKREGEMHDSSDSSS-----------VKPSGSRETKPTRKRSSPLRL 2428
Query: 364 GL 369
G+
Sbjct: 2429 GV 2430
>ref|XP_211095.1| hypothetical protein XP_211095 [Homo sapiens]
Length = 92
Score = 30.8 bits (68), Expect = 4.0
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 217 RKSRKWSH-SHISSDLASPMGHTAV---ARWSLPPSGSIEGDPF 336
R+ +W +HIS LA+PM H AV A SLPP+ + E F
Sbjct: 11 RQKVRWERQAHISEGLAAPMWHEAVAAAASSSLPPATAPEAKAF 54
>dbj|BAB21849.1| KIAA1758 protein [Homo sapiens]
Length = 1662
Score = 30.4 bits (67), Expect = 5.2
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 4/52 (7%)
Frame = -3
Query: 436 PGLIQYN----PLHTLHSSC*HPTSELNPTLKPQLQL*MDHLQWNRKEASSN 293
PG+ N P+H+LHS C + L+P L P++Q Q N + N
Sbjct: 412 PGIAPQNSQAPPMHSLHSPC--ANTSLHPGLNPRIQAARFRFQGNANDPDQN 461
>ref|NP_219499.1| cortactin binding protein 2; cortactin-binding protein 2;
chromosome 7 open reading frame 8 [Homo sapiens]
gi|16945899|gb|AAL32176.1| cortactin-binding protein 2
[Homo sapiens]
Length = 1663
Score = 30.4 bits (67), Expect = 5.2
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 4/52 (7%)
Frame = -3
Query: 436 PGLIQYN----PLHTLHSSC*HPTSELNPTLKPQLQL*MDHLQWNRKEASSN 293
PG+ N P+H+LHS C + L+P L P++Q Q N + N
Sbjct: 413 PGIAPQNSQAPPMHSLHSPC--ANTSLHPGLNPRIQAARFRFQGNANDPDQN 462
>pir||T03505 nitrogen fixation positive activator protein homolog - Rhodobacter
capsulatus gi|3128306|gb|AAC16158.1| potential nitrogen
fixation positive activator protein [Rhodobacter
capsulatus]
Length = 698
Score = 30.4 bits (67), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 262 ASPMGHTAVARWSLPPSGSIEGDPFKAEVEALKLGLILMW 381
A+P+ + A+ARW+ P G++ D F EA L + L W
Sbjct: 474 AAPIRYEALARWTSPELGAVAPDRFIKVAEASGLIMPLGW 513
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,912,933
Number of Sequences: 1393205
Number of extensions: 7991087
Number of successful extensions: 14827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14827
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
