Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006225A_C01 KMC006225A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01854.1| DNA-directed RNA polymerase, subunit B [Arabidop... 138 4e-32
dbj|BAB02021.1| DNA-dependent RNA polymerase II [Arabidopsis tha... 92 3e-18
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA gi|2838025... 69 3e-11
emb|CAC83675.1| mucin 5 [Homo sapiens] 65 6e-10
gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmo... 63 2e-09
>dbj|BAB01854.1| DNA-directed RNA polymerase, subunit B [Arabidopsis thaliana]
Length = 1172
Score = 138 bits (347), Expect = 4e-32
Identities = 70/138 (50%), Positives = 101/138 (72%), Gaps = 1/138 (0%)
Frame = +2
Query: 95 DVDFDLDDDDEDSSSNAEI-LKELGEDMVKHFCTKASRMFFDEHGLVSHQINSYNQFIAA 271
D+D D+ D +E ++ EI L ELGE ++ FC KA+ FFD++GL+SHQ+NSYN FI
Sbjct: 3 DMDIDVKDLEEFEATTGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEH 62
Query: 272 GLQAAFDAFGDLNVTPSYDPSKKGDNEHFKYATVKFGKVTLDRPKFWGGAANAQEFKMLP 451
GLQ F +FG++ V PS+D KK DN+ ++YATVKFG+VT+++P F+ ++ +E + LP
Sbjct: 63 GLQNVFQSFGEMLVEPSFDVVKKKDND-WRYATVKFGEVTVEKPTFF---SDDKELEFLP 118
Query: 452 RHARLQRMTYAAKMKVTV 505
HARLQ MTY+A++KV V
Sbjct: 119 WHARLQNMTYSARIKVNV 136
>dbj|BAB02021.1| DNA-dependent RNA polymerase II [Arabidopsis thaliana]
Length = 1119
Score = 92.4 bits (228), Expect = 3e-18
Identities = 51/111 (45%), Positives = 70/111 (62%)
Frame = +2
Query: 116 DDDEDSSSNAEILKELGEDMVKHFCTKASRMFFDEHGLVSHQINSYNQFIAAGLQAAFDA 295
D DE S+ + ELGE ++ FC KA+ FF+E GL+SHQ+NSYN FI GLQ F++
Sbjct: 2 DVDEIESAGQINISELGESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFES 61
Query: 296 FGDLNVTPSYDPSKKGDNEHFKYATVKFGKVTLDRPKFWGGAANAQEFKML 448
FGD+ V PS+D KK D + ++YATV F K+ + KF G E ++L
Sbjct: 62 FGDILVEPSFDVIKKKDGD-WRYATV-FKKIVIKHDKFKTGQDEYVEKEIL 110
>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA gi|28380257|gb|AAF50957.3|
CG3047-PA [Drosophila melanogaster]
Length = 1225
Score = 68.9 bits (167), Expect = 3e-11
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIPL--------------PTPRFSRS*EKTWSSISAP 194
ST+TTT+S P T+T ST+TTTT+ P PT RS T +S
Sbjct: 242 STTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTT 301
Query: 195 KLPECSSTSTASSATR*TP-----TTSSSPPVFKPR--SMPSATSMSRPATILPRRVTTS 353
P C++T++ S TR TP T++S P PR + PS T RP T PR TT+
Sbjct: 302 TTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTTCTRRPTTTTPRSTTTT 361
Query: 354 ISNTPPSSSGR*RLIGRSSGAARRMLRS 437
++ P +++ R +SG RS
Sbjct: 362 CTSGPTTTTPRSTTTTCTSGPTTTTPRS 389
Score = 63.9 bits (154), Expect = 1e-09
Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT ST +T+T STTTT PT RS KT + P ++T+T S T
Sbjct: 981 STTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTT 1040
Query: 243 *TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
TP TT+S P PRS + + SRP T PR TT+ ++ P +++ R
Sbjct: 1041 TTPRSTTTTTTSRPTTTTPRSTTTPCT-SRPTTTTPRSTTTTTTSRPTTTTPR 1092
Score = 62.8 bits (151), Expect = 2e-09
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 430 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 489
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + TS S P T PR
Sbjct: 490 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPR 548
Query: 339 RVTTSISNTPPSSSGR*RLIGRSSGAARRMLRS 437
TT+ ++ P +++ R +SG RS
Sbjct: 549 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 581
Score = 62.8 bits (151), Expect = 2e-09
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 542 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 601
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + TS S P T PR
Sbjct: 602 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPR 660
Query: 339 RVTTSISNTPPSSSGR*RLIGRSSGAARRMLRS 437
TT+ ++ P +++ R +SG RS
Sbjct: 661 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 693
Score = 62.8 bits (151), Expect = 2e-09
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 574 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 633
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + TS S P T PR
Sbjct: 634 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPR 692
Query: 339 RVTTSISNTPPSSSGR*RLIGRSSGAARRMLRS 437
TT+ ++ P +++ R +SG RS
Sbjct: 693 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 725
Score = 62.8 bits (151), Expect = 2e-09
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Frame = +3
Query: 54 ASTSTTTS----STPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTS 221
++T+TTTS +TP ++T+ STS TT P T S S T + S K C+ T+
Sbjct: 965 STTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTT 1024
Query: 222 TASSATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
T +T T TT+S P PRS + T+ SRP T PR TT ++ P +++ R
Sbjct: 1025 TTPRST--TTTTTSRPTTTTPRS-TTTTTTSRPTTTTPRSTTTPCTSRPTTTTPR 1076
Score = 62.8 bits (151), Expect = 2e-09
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 654 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 713
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + TS S P T PR
Sbjct: 714 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPR 772
Query: 339 RVTTSISNTPPSSSGR*RLIGRSSGAARRMLRS 437
TT+ ++ P +++ R +SG RS
Sbjct: 773 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 805
Score = 62.8 bits (151), Expect = 2e-09
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 478 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 537
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + TS S P T PR
Sbjct: 538 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPR 596
Query: 339 RVTTSISNTPPSSSGR*RLIGRSSGAARRMLRS 437
TT+ ++ P +++ R +SG RS
Sbjct: 597 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 629
Score = 62.0 bits (149), Expect = 4e-09
Identities = 46/130 (35%), Positives = 64/130 (48%), Gaps = 5/130 (3%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT+ST +T+T STTTT PT RS T +S P ++T++ S T
Sbjct: 389 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 448
Query: 243 *TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRS 407
TP T++S P PRS + TS S P T PR TT+ ++ P +++ R +
Sbjct: 449 TTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTST 507
Query: 408 SGAARRMLRS 437
SG RS
Sbjct: 508 SGPTTTTPRS 517
Score = 62.0 bits (149), Expect = 4e-09
Identities = 42/121 (34%), Positives = 60/121 (48%), Gaps = 13/121 (10%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIP---------LPTPRFSRS*EKTWSSISAPKLPEC 209
STS T++TP ++T+TSTS TT P PT RS T +S P
Sbjct: 986 STSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRS 1045
Query: 210 SSTSTASSATR*TPTTSSSPPVFKPRS----MPSATSMSRPATILPRRVTTSISNTPPSS 377
++T+T S T TP ++++P +P + + T+ SRP T PR TT T PS+
Sbjct: 1046 TTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCPTTTPSA 1105
Query: 378 S 380
S
Sbjct: 1106 S 1106
Score = 61.6 bits (148), Expect = 5e-09
Identities = 47/136 (34%), Positives = 66/136 (47%), Gaps = 8/136 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 718 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 777
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + TS S P T PR
Sbjct: 778 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPR 836
Query: 339 RVTTSISNTPPSSSGR 386
TT+ ++ P +++ R
Sbjct: 837 STTTTSTSGPTTTTPR 852
Score = 61.6 bits (148), Expect = 5e-09
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT+ T +T+T STTTT PT RS T +S P ++T+ S T
Sbjct: 869 STTTTCTSGPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSGPTT 928
Query: 243 *TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
TP T++ +P PRS + TS SRP T PR TT+ ++ P +++ R
Sbjct: 929 TTPRSTTKTSTCAPTTTTPRS-TTTTSTSRPTTTTPRSTTTTTTSRPTTTTPR 980
Score = 60.8 bits (146), Expect = 8e-09
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT+ T +T+T STTTT PT RS KT + P ++T++ S T
Sbjct: 901 STTTTCTSCPTTTTPRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRPTT 960
Query: 243 *TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
TP TT+S P PRS + S SRP T PR TT+ ++ P +++ R
Sbjct: 961 TTPRSTTTTTTSRPTTTTPRS-TTTPSTSRPTTTTPRSTTTTSTSRPTTTTPR 1012
Score = 60.1 bits (144), Expect = 1e-08
Identities = 45/130 (34%), Positives = 63/130 (47%), Gaps = 5/130 (3%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT+ T +T+T STTTT PT RS T +S P ++T++ S T
Sbjct: 373 STTTTCTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 432
Query: 243 *TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRS 407
TP T++S P PRS + TS S P T PR TT+ ++ P +++ R +
Sbjct: 433 TTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTST 491
Query: 408 SGAARRMLRS 437
SG RS
Sbjct: 492 SGPTTTTPRS 501
Score = 60.1 bits (144), Expect = 1e-08
Identities = 46/136 (33%), Positives = 65/136 (46%), Gaps = 8/136 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 766 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 825
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T++ S T TP T++S P PRS + T S P T PR
Sbjct: 826 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSCPTTTTPRS-TTTTCTSGPTTTTPR 884
Query: 339 RVTTSISNTPPSSSGR 386
TT+ ++ P +++ R
Sbjct: 885 STTTTCTSCPTTTTPR 900
Score = 58.9 bits (141), Expect = 3e-08
Identities = 46/136 (33%), Positives = 63/136 (45%), Gaps = 8/136 (5%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMAST---STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKT 173
P P +S G +T STTT+ST +T+T STTTT PT RS T
Sbjct: 798 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT 857
Query: 174 WSSISAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPR 338
+S P ++T+ S T TP T +S P PRS + T S P T PR
Sbjct: 858 STSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTTTPRS-TTTTCTSCPTTTTPR 916
Query: 339 RVTTSISNTPPSSSGR 386
TT+ ++ P +++ R
Sbjct: 917 STTTTCTSGPTTTTPR 932
Score = 58.2 bits (139), Expect = 5e-08
Identities = 38/113 (33%), Positives = 65/113 (56%), Gaps = 3/113 (2%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTS--TA 227
ST+TT++S P T+T S T+TTT++ TPR + + + + + P+ +STS T
Sbjct: 949 STTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTT 1008
Query: 228 SSATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
++ T T++ +P PRS + T+ SRP T PR TT+ ++ P +++ R
Sbjct: 1009 TTPRSTTKTSTCAPTTTTPRS-TTTTTTSRPTTTTPRSTTTTTTSRPTTTTPR 1060
Score = 57.8 bits (138), Expect = 7e-08
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT+ST +T+T STTTT PT RS T + P C++T++ + T
Sbjct: 226 STTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPTT 285
Query: 243 *TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
TP TT+S P PR + TS P PR TT+ ++ P +++ R
Sbjct: 286 TTPRSTTTTTTSRPTTTTPR-CTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPR 337
Score = 57.4 bits (137), Expect = 9e-08
Identities = 37/112 (33%), Positives = 56/112 (49%), Gaps = 4/112 (3%)
Frame = +3
Query: 63 STTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR 242
STTT+ T +T+T STT T PT RS T +S P ++T+T S T
Sbjct: 917 STTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTT 976
Query: 243 *TPTTSSSPPVFKPRS----MPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
TP ++++P +P + + TS SRP T PR T + + P +++ R
Sbjct: 977 TTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPR 1028
Score = 57.0 bits (136), Expect = 1e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 421 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 480
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 481 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 540
Query: 411 GAARRMLRS 437
G RS
Sbjct: 541 GPTTTTPRS 549
Score = 57.0 bits (136), Expect = 1e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 405 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 464
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 465 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 524
Query: 411 GAARRMLRS 437
G RS
Sbjct: 525 GPTTTTPRS 533
Score = 57.0 bits (136), Expect = 1e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 709 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 768
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 769 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 828
Query: 411 GAARRMLRS 437
G RS
Sbjct: 829 GPTTTTPRS 837
Score = 57.0 bits (136), Expect = 1e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 645 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 704
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 705 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 764
Query: 411 GAARRMLRS 437
G RS
Sbjct: 765 GPTTTTPRS 773
Score = 57.0 bits (136), Expect = 1e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 629 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 688
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 689 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 748
Query: 411 GAARRMLRS 437
G RS
Sbjct: 749 GPTTTTPRS 757
Score = 57.0 bits (136), Expect = 1e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 533 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 592
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 593 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 652
Query: 411 GAARRMLRS 437
G RS
Sbjct: 653 GPTTTTPRS 661
Score = 56.6 bits (135), Expect = 2e-07
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSA 236
ST+TTT+S P +T+T TTTT PT RS T +S P C++T + +
Sbjct: 290 STTTTTTSRP--TTTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTTCT 347
Query: 237 TR*TPTT--------SSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*R 392
R T TT +S P PRS + T S P T PR TT+ ++ P +++ R
Sbjct: 348 RRPTTTTPRSTTTTCTSGPTTTTPRS-TTTTCTSGPTTTTPRSTTTTSTSGPTTTTPRST 406
Query: 393 LIGRSSGAARRMLRS 437
+SG RS
Sbjct: 407 TTTSTSGPTTTTPRS 421
Score = 56.6 bits (135), Expect = 2e-07
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTS-TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT++S P T+T S T+T+T+ TPR + + + + + P+ +STS ++
Sbjct: 757 STTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 816
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRSS 410
T R T TTS+S P + TS S P T PR TT+ ++ P +++ R +S
Sbjct: 817 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSCPTTTTPRSTTTTCTS 876
Query: 411 GAARRMLRS 437
G RS
Sbjct: 877 GPTTTTPRS 885
Score = 55.8 bits (133), Expect = 3e-07
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIPLPT-PRFSRS*EKTWSSISAPKLPECSSTSTASS 233
ST+TT +S P T+T ST+TT T P T PR + + + + + P+ +STS ++
Sbjct: 357 STTTTCTSGPTTTTPRSTTTTCTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT 416
Query: 234 AT-R*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
T R T TTS+S P + TS S P T PR TT+ S + P+++
Sbjct: 417 TTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTT-STSGPTTT 465
Score = 55.8 bits (133), Expect = 3e-07
Identities = 49/141 (34%), Positives = 67/141 (46%), Gaps = 14/141 (9%)
Frame = +3
Query: 57 STSTTTSSTP--WTSTSTS-------TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPEC 209
STS T++TP T+TSTS STTTT PT RS T +S P
Sbjct: 474 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 533
Query: 210 SSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPS 374
++T++ S T TP T++S P PRS + TS S P T PR TT+ ++ P +
Sbjct: 534 TTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS-TTTTSTSGPTTTTPRSTTTTSTSGPTT 592
Query: 375 SSGR*RLIGRSSGAARRMLRS 437
++ R +SG RS
Sbjct: 593 TTPRSTTTTSTSGPTTTTPRS 613
Score = 55.1 bits (131), Expect = 5e-07
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Frame = +3
Query: 60 TSTTTSSTPWTSTSTST---------STTTTKIPLPTPRFSRS*EKTWSSISAPKLPECS 212
TS T++TP ++T TST STTTT PT RS T +S P +
Sbjct: 923 TSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRST 982
Query: 213 STSTASSATR*TP----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
+T + S T TP TTS+S P + TS P T PR TT+ ++ P +++
Sbjct: 983 TTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTT 1042
Query: 381 GR 386
R
Sbjct: 1043 PR 1044
Score = 52.8 bits (125), Expect = 2e-06
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Frame = +3
Query: 54 ASTSTTTS----STPWTSTSTST---------STTTTKIPLP---TPRFSRS*EKTWSSI 185
++T+TTTS +TP +T+TST STTTT P TPR + + T +
Sbjct: 290 STTTTTTSRPTTTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTTCTRR 349
Query: 186 SAPKLPECSSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTT 350
P ++T+ S T TP T +S P PRS + TS S P T PR TT
Sbjct: 350 PTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSGPTTTTPRS-TTTTSTSGPTTTTPRSTTT 408
Query: 351 SISNTPPSSSGR*RLIGRSSGAARRMLRS 437
+ ++ P +++ R +SG RS
Sbjct: 409 TSTSGPTTTTPRSTTTTSTSGPTTTTPRS 437
Score = 52.4 bits (124), Expect = 3e-06
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Frame = +3
Query: 57 STSTTTSSTP--WTSTSTS-------TSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPEC 209
STS T++TP T+TSTS STTTT PT RS T +S P
Sbjct: 794 STSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRS 853
Query: 210 SSTSTASSATR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPS 374
++T++ S T TP T +S P PRS + T S P T PR TT+ ++ P +
Sbjct: 854 TTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRS-TTTTCTSCPTTTTPRSTTTTCTSCPTT 912
Query: 375 SSGR*RLIGRSSGAARRMLRS 437
++ R +SG RS
Sbjct: 913 TTPRSTTTTCTSGPTTTTPRS 933
Score = 51.2 bits (121), Expect = 7e-06
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Frame = +3
Query: 66 TTTSSTPWT---STSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSA 236
TTT ST T +T+T STTTT PT RS T +S P ++T++ S
Sbjct: 339 TTTPSTTCTRRPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSGPTTTTPRSTTTTSTSGP 398
Query: 237 TR*TP-----TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
T TP T++S P PRS + TS S P T PR TT+ S + P+++
Sbjct: 399 TTTTPRSTTTTSTSGPTTTTPRST-TTTSTSGPTTTTPRSTTTT-STSGPTTT 449
Score = 49.3 bits (116), Expect = 3e-05
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSA 236
ST+TTT+S P +T+T STTTT PT RS +S P ++T+T S
Sbjct: 1029 STTTTTTSRP--TTTTPRSTTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRP 1086
Query: 237 TR*TPTTSSSP-PVFKPRSMPSATSMSR 317
T TP ++++P P P + P+ T+ +R
Sbjct: 1087 TTTTPRSTTTPCPTTTPSASPTRTTTTR 1114
Score = 48.1 bits (113), Expect = 6e-05
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +3
Query: 60 TSTTTSSTPWTSTST--STSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
+ST S+P TST TS T + PTP S +T C+ T+T
Sbjct: 173 SSTAIPSSPCIDTSTVIPTSPCTQETTTPTPTCSTQGTQTTPC-------TCAQTTTTPR 225
Query: 234 ATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR 386
+T T T++S P PRS + T+ SRP T PR TT+ + P +++ R
Sbjct: 226 ST--TTTSTSRPTTTTPRS-TTTTTTSRPTTTTPRSTTTTTTRRPTTTTPR 273
Score = 36.2 bits (82), Expect = 0.22
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 57 STSTTTSSTPWTSTS-------TSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSS 215
ST+TTT+S P T+T TS TTTT T SR T S + P C +
Sbjct: 1045 STTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTP----CPT 1100
Query: 216 TSTASSATR*TPTTSSSP 269
T+ ++S TR T T P
Sbjct: 1101 TTPSASPTRTTTTRRPCP 1118
>emb|CAC83675.1| mucin 5 [Homo sapiens]
Length = 1349
Score = 64.7 bits (156), Expect = 6e-10
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Frame = +3
Query: 51 MASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTAS 230
+++ +T+T+STP TST +S +T+TT PTP+ S + T S+ SA P S+TS +
Sbjct: 768 ISAPTTSTTSTPQTSTISSPTTSTT----PTPQTSTTSSPTTSTTSA---PTTSTTSAPT 820
Query: 231 SATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSSGR*RLIGRS 407
++T TP TS SS P S P+A+++S P T TTS ++ P SS+ ++
Sbjct: 821 TSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTTSFHTTSTTSPPTSSTSSTPQTSKT 880
Query: 408 SGA 416
S A
Sbjct: 881 SAA 883
Score = 57.8 bits (138), Expect = 7e-08
Identities = 45/138 (32%), Positives = 67/138 (47%), Gaps = 23/138 (16%)
Frame = +3
Query: 36 SSKDGMASTSTTTSSTPWTSTSTSTSTT--------------TTKIPLPT----PRFSRS 161
+S +TSTT +S P T+++ +TSTT TT P T P S +
Sbjct: 646 TSTTSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAPTSSTT 705
Query: 162 *EKTWSSISAP-----KLPECSSTSTASSATR*TPTTSSSPPVFKPRSMPSATSMSRPAT 326
T S+ISAP P S+TS +++T PT++SS P S P+ ++ S P T
Sbjct: 706 SAPTTSTISAPTTSTISAPTTSTTSAPTASTTSAPTSTSSAPTTNTTSAPTTSTTSAPIT 765
Query: 327 ILPRRVTTSISNTPPSSS 380
TTS ++TP +S+
Sbjct: 766 STISAPTTSTTSTPQTST 783
Score = 55.1 bits (131), Expect = 5e-07
Identities = 41/109 (37%), Positives = 59/109 (53%), Gaps = 1/109 (0%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
++TS T+ST TS TSTS+ T P S + S+ISA P S+TST +
Sbjct: 727 STTSAPTAST--TSAPTSTSSAPTTNTTSAPTTSTTSAPITSTISA---PTTSTTSTPQT 781
Query: 234 ATR*TPTTSSSP-PVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSS 377
+T +PTTS++P P S P+ ++ S P T TTS ++TP +S
Sbjct: 782 STISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTS 830
Score = 54.7 bits (130), Expect = 6e-07
Identities = 40/118 (33%), Positives = 64/118 (53%), Gaps = 9/118 (7%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTSTSTSTTTTKIP----LPTPRFSRS*EKTWSSISAPKLPECSSTS 221
++ +T+T+STP T+TS++ +++TT P + P S T S+ SAP S+ +
Sbjct: 682 SAPTTSTTSTPQTTTSSAPTSSTTSAPTTSTISAPTTSTISAPTTSTTSAPTASTTSAPT 741
Query: 222 TASSA----TR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
+ SSA T PTTS +S P+ S P+ ++ S P T TTS + TP +S+
Sbjct: 742 STSSAPTTNTTSAPTTSTTSAPITSTISAPTTSTTSTPQTSTISSPTTSTTPTPQTST 799
Score = 51.6 bits (122), Expect = 5e-06
Identities = 41/111 (36%), Positives = 59/111 (52%), Gaps = 4/111 (3%)
Frame = +3
Query: 60 TSTTTSSTPWTSTST-STSTTTTKIPLPT--PRFSRS*EKTWSSISAPKLPECSSTSTAS 230
TS+ TS+T ++TS +TSTT IP T P S + T S+ SA P S+TST
Sbjct: 637 TSSITSTTQTSTTSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTSA---PTTSTTSTPQ 693
Query: 231 SATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
+ T PT+S +S P S P+ +++S P T T S ++ P S+S
Sbjct: 694 TTTSSAPTSSTTSAPTTSTISAPTTSTISAPTTSTTSAPTASTTSAPTSTS 744
Score = 50.8 bits (120), Expect = 9e-06
Identities = 41/128 (32%), Positives = 64/128 (49%), Gaps = 2/128 (1%)
Frame = +3
Query: 3 PFLPFPMGHIGSSKDGMASTSTTTSSTPWTSTS-TSTSTTTTKIPLPTPRFSRS*EKTWS 179
P + P S+ S +TT ++ TST+ TST++ T P S + T S
Sbjct: 612 PLVGEPPAQTQSTSSWQKSRTTTLVTSSITSTTQTSTTSAPTTSTTPASIPSTTSAPTTS 671
Query: 180 SISAPKLPECSSTSTASSATR*TP-TTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSI 356
+ SA P S+TS +++T TP TT+SS P S P+ +++S P T TTS
Sbjct: 672 TTSA---PTTSTTSAPTTSTTSTPQTTTSSAPTSSTTSAPTTSTISAPTTSTISAPTTST 728
Query: 357 SNTPPSSS 380
++ P +S+
Sbjct: 729 TSAPTAST 736
Score = 50.4 bits (119), Expect = 1e-05
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = +3
Query: 33 GSSKDGMASTSTTTSSTPWTSTSTSTSTTT--TKIPLPTPRFSRS*EKTWSSISAPKLPE 206
G++ + +TSTT++ST T+++ +TSTT+ P P P S + T S+ SAP
Sbjct: 1198 GTTPSPVPTTSTTSASTTSTTSAPTTSTTSGPGTTPSPVPSTSITSAATTSTTSAPTTR- 1256
Query: 207 CSSTSTASSATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
++++ SS T TT S P S P+ ++ S P T TTS ++ P +S+
Sbjct: 1257 -TTSAPTSSMTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPITST 1313
Score = 49.7 bits (117), Expect = 2e-05
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTSTSTSTTTTKIPLPT----PRFSRS*EKTWSSISAPKLPECSSTS 221
+S +T+T+S P TST+++ +T+TT P + P S + T S+ISAP +S
Sbjct: 801 SSPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAP-TTSTTSFH 859
Query: 222 TASSATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
T S+ + T +TSS+P K + S+T+ T P T++ S + S+S
Sbjct: 860 TTSTTSPPTSSTSSTPQTSKTSAATSSTTSGSGTTPSPVPTTSTASVSKTSTS 912
Score = 49.7 bits (117), Expect = 2e-05
Identities = 38/116 (32%), Positives = 63/116 (53%), Gaps = 7/116 (6%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAP-----KLPECSST 218
++ +T+T+STP TS S++ +++TT P + +R T S ISAP P S+T
Sbjct: 368 SAPTTSTTSTPQTSISSAPTSSTTSAPTSSTISAR----TTSIISAPTTSTTSSPTTSTT 423
Query: 219 STASSATR*TPT--TSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
S +++T PT T+S+P K + S+T+ S T P T++ S + S+S
Sbjct: 424 SATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTSTASVSKTSTS 479
Score = 49.3 bits (116), Expect = 3e-05
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Frame = +3
Query: 18 PMGHIGSSKDGMASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRF------SRS*EKTWS 179
P S + +T TTS+T TST+++ TT+ IP TP S + T S
Sbjct: 1053 PTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTTSTIPASTPSTTSAPTTSTTSAPTTS 1112
Query: 180 SISAP-----KLPECSSTSTASSATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRR 341
+ SAP P S+T +++T PTTS +S P S + +++S P T
Sbjct: 1113 TTSAPTHRTTSGPTTSTTLAPTTSTTSAPTTSTNSAPTTSTISASTTSTISAPTTSTISS 1172
Query: 342 VTTSISNTPPSS 377
T+S ++TP +S
Sbjct: 1173 PTSSTTSTPQTS 1184
Score = 48.1 bits (113), Expect = 6e-05
Identities = 38/112 (33%), Positives = 61/112 (53%), Gaps = 4/112 (3%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTAS-- 230
+TS T S++ W + T+T TT+ TP+ S + T S+ SAP +TST S
Sbjct: 319 ATSPTQSTSSWQKSRTTTLVTTSTTS--TPQTSTTSAPTTSTTSAP------TTSTTSAP 370
Query: 231 -SATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
++T TP TS SS P S P+++++S T + TTS +++P +S+
Sbjct: 371 TTSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTST 422
Score = 47.8 bits (112), Expect = 7e-05
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 37/141 (26%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTSTSTSTT------TTKIPLPT------PRFSRS*EKTWSSISAPK 197
++ +++T+STP TST+++++T+ TT P+PT P S + T S+ISAP
Sbjct: 14 STPTSSTTSTPQTSTTSASTTSITSGPGTTPSPVPTTSTTSAPTTSTTSAATTSTISAPT 73
Query: 198 LPECS----STSTASSATR*T---------PTTS-SSPPVFKPRSMPSATSMSRPAT--- 326
S ST++AS+A++ + PTTS +SPP S +A+ S P T
Sbjct: 74 TSTTSAPTTSTTSASTASKTSGLGTTPSPIPTTSTTSPPTTSTTSASTASKTSGPGTTPS 133
Query: 327 --------ILPRRVTTSISNT 365
PR TTS S T
Sbjct: 134 PVPTTSTIFAPRTSTTSASTT 154
Score = 47.0 bits (110), Expect = 1e-04
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +3
Query: 66 TTTSSTPWTSTS----TSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASS 233
T+T+S+P TST+ TST++ T TP+ S S T S+ SAP S+ +T+++
Sbjct: 797 TSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTT 856
Query: 234 ATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPS 374
+ T TT SPP S P TS + AT TTS S T PS
Sbjct: 857 SFHTTSTT--SPPTSSTSSTPQ-TSKTSAAT----SSTTSGSGTTPS 896
Score = 46.6 bits (109), Expect = 2e-04
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +3
Query: 18 PMGHIGSSKDGMASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPK 197
P S + +T TTS+T TST+++ TT+ PT + + + S
Sbjct: 322 PTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTTSTTSAPTTSTTSA-----PTTSTTS 376
Query: 198 LPECSSTSTASSATR*TPTTSS-SPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPS 374
P+ S +S +S+T PT+S+ S S P+ ++ S P T TTS ++ P S
Sbjct: 377 TPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTSTTSATTTSTTSAPTS 436
Query: 375 SS 380
S+
Sbjct: 437 ST 438
Score = 46.2 bits (108), Expect = 2e-04
Identities = 40/126 (31%), Positives = 63/126 (49%), Gaps = 18/126 (14%)
Frame = +3
Query: 54 ASTSTTTSSTPWTST------STSTSTTTTKIPLP------TPRFSRS*EKTWSSISA-- 191
++ +T+T+S P TST ST ++ TT+ I P TP+ S++ T S+ S
Sbjct: 1139 SAPTTSTNSAPTTSTISASTTSTISAPTTSTISSPTSSTTSTPQTSKTSAATSSTTSGSG 1198
Query: 192 ---PKLPECSSTSTASSATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSIS 359
+P S+TS ++++T PTTS +S P P +PS + S T TT +
Sbjct: 1199 TTPSPVPTTSTTSASTTSTTSAPTTSTTSGPGTTPSPVPSTSITSAATTSTTSAPTTRTT 1258
Query: 360 NTPPSS 377
+ P SS
Sbjct: 1259 SAPTSS 1264
Score = 45.8 bits (107), Expect = 3e-04
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTSTSTSTTTTKIPLP----TPRFSRS*EKTWSSISAPKLPECSS-- 215
++ T+T+S P TST+++ +T+TT P TP+ S S T S+ SAP S+
Sbjct: 344 STPQTSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTSSTISART 403
Query: 216 --------TSTASSATR*TPTTSSSPPVFKPRSMPSATSMSRPATILPRRV---TTSISN 362
TST SS T T+++S S P++++ S P T TTS S
Sbjct: 404 TSIISAPTTSTTSSPT----TSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSG 459
Query: 363 TPPS 374
T PS
Sbjct: 460 TTPS 463
Score = 45.4 bits (106), Expect = 4e-04
Identities = 38/114 (33%), Positives = 63/114 (54%), Gaps = 5/114 (4%)
Frame = +3
Query: 54 ASTSTTTSSTPWTSTS----TSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTS 221
++ +T+T+STP +ST+ TST++ +T P + S T S+ SA P S+TS
Sbjct: 6 SAPTTSTTSTPTSSTTSTPQTSTTSASTTSITSGPGTTPSPVPTTSTTSA---PTTSTTS 62
Query: 222 TASSATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
A+++T PTTS +S P S +A+ S T P + T+ + +PP++S
Sbjct: 63 AATTSTISAPTTSTTSAPTTSTTSASTASKTSGLGT-TPSPIPTTSTTSPPTTS 115
Score = 45.4 bits (106), Expect = 4e-04
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 18 PMGHIGSSKDGMASTSTTTSSTPWTSTSTST-------STTTTKIPLPTPRFSRS*EKTW 176
P G S +S + ++T T+++TST + TT+ IP TP S + T
Sbjct: 1046 PSGRATSPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTTSTIPASTP--STTSAPTT 1103
Query: 177 SSISAP-----KLPECSSTSTASSATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPR 338
S+ SAP P +TS +++T PTTS +S P S P+ +++S T
Sbjct: 1104 STTSAPTTSTTSAPTHRTTSGPTTSTTLAPTTSTTSAPTTSTNSAPTTSTISASTTSTIS 1163
Query: 339 RVTTSISNTPPSSS 380
TTS ++P SS+
Sbjct: 1164 APTTSTISSPTSST 1177
Score = 45.1 bits (105), Expect = 5e-04
Identities = 41/126 (32%), Positives = 61/126 (47%), Gaps = 11/126 (8%)
Frame = +3
Query: 36 SSKDGMASTSTT------TSSTPWTSTSTSTSTTTTKIPLPT----PRFSRS*EKTWSSI 185
+S +TSTT T+S P TST+ + +T+TT P + P S T S+I
Sbjct: 1103 TSTTSAPTTSTTSAPTHRTTSGPTTSTTLAPTTSTTSAPTTSTNSAPTTSTISASTTSTI 1162
Query: 186 SAPKLPECSSTSTASSATR*TPTTSSSPPVFKPRSMPSATSMSR-PATILPRRVTTSISN 362
SA P S+ S+ +S+T TP TS + + S T+ S P T TTS ++
Sbjct: 1163 SA---PTTSTISSPTSSTTSTPQTSKTSAATSSTTSGSGTTPSPVPTTSTTSASTTSTTS 1219
Query: 363 TPPSSS 380
P +S+
Sbjct: 1220 APTTST 1225
Score = 43.5 bits (101), Expect = 0.001
Identities = 30/101 (29%), Positives = 45/101 (43%), Gaps = 1/101 (0%)
Frame = +3
Query: 81 TPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTASSATR*TPTTS 260
TP TSTS T + P +W L S TST ++T PTTS
Sbjct: 596 TPKGCPVTSTSVTAPSPLVGEPPAQTQSTSSWQKSRTTTLVTSSITSTTQTSTTSAPTTS 655
Query: 261 SSP-PVFKPRSMPSATSMSRPATILPRRVTTSISNTPPSSS 380
++P + S P+ ++ S P T TTS ++TP +++
Sbjct: 656 TTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTT 696
Score = 42.4 bits (98), Expect = 0.003
Identities = 29/92 (31%), Positives = 49/92 (52%)
Frame = +3
Query: 51 MASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTAS 230
+++ +T+T+S+P TST+++T+T+TT P + S P+ S TS A+
Sbjct: 407 ISAPTTSTTSSPTTSTTSATTTSTTSAP---------------TSSTTSTPQTSKTSAAT 451
Query: 231 SATR*TPTTSSSPPVFKPRSMPSATSMSRPAT 326
S+T TSSS P + S S+S+ +T
Sbjct: 452 SST-----TSSSGTTPSPVTTTSTASVSKTST 478
Score = 42.0 bits (97), Expect = 0.004
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +3
Query: 36 SSKDGMASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPK-LPECS 212
+S +TSTT+++T TST ++ +T+TT P + + + KT + P +P S
Sbjct: 50 TSTTSAPTTSTTSAAT--TSTISAPTTSTTSAPTTSTTSASTASKTSGLGTTPSPIPTTS 107
Query: 213 STSTASSATR*TPTTS-SSPPVFKPRSMPSATSMSRPATILPRRVTTSISNTP 368
+TS +++T T S +S P P +P+ +++ P T TTS + P
Sbjct: 108 TTSPPTTSTTSASTASKTSGPGTTPSPVPTTSTIFAPRTSTTSASTTSTTPGP 160
Score = 40.8 bits (94), Expect = 0.009
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Frame = +3
Query: 63 STTTSSTPWTSTS----TSTSTTTTKIPLPTPRFSRS*EKTWSSISAPKLPECSSTSTAS 230
+T+T+ P TST+ TST++ T + S T S+IS+P S+ T+
Sbjct: 1126 TTSTTLAPTTSTTSAPTTSTNSAPTTSTISASTTSTISAPTTSTISSPTSSTTSTPQTSK 1185
Query: 231 SATR*TPTTSSSPPVFKPRSMPSATSMSRPATI-LPRRVTTSISNTPPS 374
++ + TTS S P S TS S +T P TTS T PS
Sbjct: 1186 TSAATSSTTSGSGTTPSPVPTTSTTSASTTSTTSAPTTSTTSGPGTTPS 1234
Score = 40.4 bits (93), Expect = 0.012
Identities = 38/137 (27%), Positives = 62/137 (44%), Gaps = 14/137 (10%)
Frame = +3
Query: 12 PFPMGHIGSSKDGMASTSTTTSSTPW--------TSTSTSTSTTTTKIPLPTPRFSRS*E 167
P P S+ +++ TTS+T STS +++ TT+ PT R + +
Sbjct: 1203 PVPTTSTTSASTTSTTSAPTTSTTSGPGTTPSPVPSTSITSAATTSTTSAPTTRTTSA-- 1260
Query: 168 KTWSSISAP-----KLPECSSTSTASSATR*TPTTSSSP-PVFKPRSMPSATSMSRPATI 329
T S S P +P S+TS +++T P T+ SP P S P ++ S P +
Sbjct: 1261 PTSSMTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPTTSTTSAPITSTTSGPGST 1320
Query: 330 LPRRVTTSISNTPPSSS 380
TTS ++ P +S+
Sbjct: 1321 PSPVPTTSTTSAPTTST 1337
Score = 37.7 bits (86), Expect = 0.076
Identities = 39/112 (34%), Positives = 56/112 (49%), Gaps = 6/112 (5%)
Frame = +3
Query: 57 STSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAP-----KLPECSSTS 221
+++ TTS+T +TST+++ T PT S + T S+ SAP P S+ S
Sbjct: 1098 TSAPTTSTTSAPTTSTTSAPTHRTTSGPTT--STTLAPTTSTTSAPTTSTNSAPTTSTIS 1155
Query: 222 TASSATR*TPTTSS-SPPVFKPRSMPSATSMSRPATILPRRVTTSISNTPPS 374
++++T PTTS+ S P S P TS + AT TTS S T PS
Sbjct: 1156 ASTTSTISAPTTSTISSPTSSTTSTPQ-TSKTSAAT----SSTTSGSGTTPS 1202
Score = 35.4 bits (80), Expect = 0.38
Identities = 31/102 (30%), Positives = 42/102 (40%), Gaps = 1/102 (0%)
Frame = +3
Query: 18 PMGHIGSSKDGMASTSTTTSSTPWTSTSTSTSTTTTKIPLPTPRFSRS*EKTWSSISAPK 197
P + S S TTS+T +TST++ TT P+PT S
Sbjct: 1261 PTSSMTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSPVPT-------------TSTTS 1307
Query: 198 LPECSSTSTASSATR*TPTTS-SSPPVFKPRSMPSATSMSRP 320
P S+TS S PTTS +S P S +A++ S P
Sbjct: 1308 APITSTTSGPGSTPSPVPTTSTTSAPTTSTTSASTASTTSGP 1349
>gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii
yoelii]
Length = 1312
Score = 63.2 bits (152), Expect = 2e-09
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Frame = +2
Query: 89 DVDVDFDLDDDDEDSSSNAEILKELGEDMVKHFCTKASRMFFDEHGLVSHQINSYNQFIA 268
D +++ D DDED + + +G FF HGLV+ QI SYN FI
Sbjct: 18 DQNIEDVSDKDDEDQITEEDSWIVIGS-------------FFGSHGLVNQQIESYNDFIE 64
Query: 269 AGLQAAFDAFGDLNV--TPSYDPSKKGDNEHFKYATVKFGKVTLDRPKFWGGAANAQEFK 442
+Q D ++ + P Y P K +N + Y ++KFG+++LDRP F N
Sbjct: 65 YRMQEIIDEHPNIEIKPQPQYRPD-KDENNNIIY-SLKFGQLSLDRPFF--DEKNLINKN 120
Query: 443 MLPRHARLQRMTYAAKMKVTV 505
+ P+ ARL+ +TY++ + + +
Sbjct: 121 LWPQEARLRNLTYSSAIYIDI 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,778,572
Number of Sequences: 1393205
Number of extensions: 10058470
Number of successful extensions: 144762
Number of sequences better than 10.0: 2942
Number of HSP's better than 10.0 without gapping: 64360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108201
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
