Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006203A_C01 KMC006203A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB88328.1| putative protein [Arabidopsis thaliana] 49 3e-05
ref|NP_680117.1| hypothetical protein; protein id: At3g48470.1 [... 49 3e-05
ref|NP_638215.1| TonB-dependent receptor [Xanthomonas campestris... 31 9.6
ref|NP_535174.1| ABC transporter, membrane spanning protein [oli... 31 9.6
ref|NP_355969.1| AGR_L_368p [Agrobacterium tumefaciens] gi|25521... 31 9.6
>emb|CAB88328.1| putative protein [Arabidopsis thaliana]
Length = 1017
Score = 48.9 bits (115), Expect = 3e-05
Identities = 29/55 (52%), Positives = 38/55 (68%), Gaps = 7/55 (12%)
Frame = -3
Query: 412 MAMTCLQLHAEMALQTARALESARSSFKAGT------TIPSDGSKIT-IKIPYLN 269
MA++CLQLHAEMALQT+RALES S + + ++PS SK+T IK+P N
Sbjct: 960 MALSCLQLHAEMALQTSRALESTGGSSSSSSIRPMNISLPSGISKLTSIKLPSSN 1014
>ref|NP_680117.1| hypothetical protein; protein id: At3g48470.1 [Arabidopsis thaliana]
Length = 1035
Score = 48.9 bits (115), Expect = 3e-05
Identities = 29/55 (52%), Positives = 38/55 (68%), Gaps = 7/55 (12%)
Frame = -3
Query: 412 MAMTCLQLHAEMALQTARALESARSSFKAGT------TIPSDGSKIT-IKIPYLN 269
MA++CLQLHAEMALQT+RALES S + + ++PS SK+T IK+P N
Sbjct: 960 MALSCLQLHAEMALQTSRALESTGGSSSSSSIRPMNISLPSGISKLTSIKLPSSN 1014
>ref|NP_638215.1| TonB-dependent receptor [Xanthomonas campestris pv. campestris str.
ATCC 33913] gi|21114064|gb|AAM42139.1| TonB-dependent
receptor [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 928
Score = 30.8 bits (68), Expect = 9.6
Identities = 18/67 (26%), Positives = 25/67 (36%), Gaps = 16/67 (23%)
Frame = -2
Query: 446 PFLTNLFCFTKDGYDMFTTPC*DGS---------SNCPSIGVSKKFIQ-------SRHYY 315
P + NLF D ++ + PC S NC + GV F+Q +
Sbjct: 591 PSINNLFAGNSDSFETYADPCSSQSGQLSNPVVAQNCAAAGVPANFVQPGAGNGAKQTLE 650
Query: 314 PFRWIQN 294
PF W N
Sbjct: 651 PFTWTSN 657
>ref|NP_535174.1| ABC transporter, membrane spanning protein [oligopeptide]
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gi|25524185|pir||AD3134 hypothetical protein Atu4696
[imported] - Agrobacterium tumefaciens (strain C58,
Dupont) gi|17743198|gb|AAL45490.1| ABC transporter,
membrane spanning protein [oligopeptide] [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 322
Score = 30.8 bits (68), Expect = 9.6
Identities = 16/52 (30%), Positives = 26/52 (49%)
Frame = -3
Query: 487 DIINLVWLDSSINFHS*QTFFVLPKMAMTCLQLHAEMALQTARALESARSSF 332
D++ L W + + S + +LP +A++ Q+ M L A LE RS F
Sbjct: 168 DVVQLGWWSTGLLTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDF 219
>ref|NP_355969.1| AGR_L_368p [Agrobacterium tumefaciens] gi|25521502|pir||H98153
peptide ABC transporter, permease protein VC0172
[imported] - Agrobacterium tumefaciens (strain C58,
Cereon) gi|15158496|gb|AAK88754.1| AGR_L_368p
[Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 332
Score = 30.8 bits (68), Expect = 9.6
Identities = 16/52 (30%), Positives = 26/52 (49%)
Frame = -3
Query: 487 DIINLVWLDSSINFHS*QTFFVLPKMAMTCLQLHAEMALQTARALESARSSF 332
D++ L W + + S + +LP +A++ Q+ M L A LE RS F
Sbjct: 178 DVVQLGWWSTGLLTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDF 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,750,900
Number of Sequences: 1393205
Number of extensions: 8625412
Number of successful extensions: 17476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17474
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
