Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006192A_C01 KMC006192A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F96537 hypothetical protein F2J10.2 [imported] - Arabidopsi... 194 4e-49
ref|NP_172433.1| putative leucyl-tRNA synthetase; protein id: At... 192 3e-48
ref|NP_787968.1| CG33123-PA [Drosophila melanogaster] gi|2294528... 133 1e-30
gb|AAM50317.1| SD07726p [Drosophila melanogaster] 133 1e-30
ref|NP_497837.1| Leucyl tRNA Synthetase LRS-1 (134.5 kD) (lrs-1)... 129 2e-29
>pir||F96537 hypothetical protein F2J10.2 [imported] - Arabidopsis thaliana
gi|8569090|gb|AAF76435.1|AC015445_2 Contains similarity
to leucyl tRNA synthetase from Homo sapiens gb|D84223.
[Arabidopsis thaliana]
Length = 843
Score = 194 bits (494), Expect = 4e-49
Identities = 87/114 (76%), Positives = 102/114 (89%)
Frame = +2
Query: 164 SFARRDRLREIDLKVQKWWEDADVFRSEPGDAPPKPGEKFFGNFPFPYMNGFLHLGHAFS 343
SFA+RDRL EI++ V+KWWED DVFR+E D PKPGEKFF FPFPYMNG+LH+GHAFS
Sbjct: 7 SFAKRDRLLEIEVAVRKWWEDEDVFRAESRDHLPKPGEKFFSTFPFPYMNGYLHIGHAFS 66
Query: 344 VSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPKE 505
+SK++FA+A+HRLRGANVLLPF FHCTGMPIKASADKL+REI +FGDPPVFP +
Sbjct: 67 LSKVDFASAYHRLRGANVLLPFGFHCTGMPIKASADKLSREILQFGDPPVFPAQ 120
>ref|NP_172433.1| putative leucyl-tRNA synthetase; protein id: At1g09620.1
[Arabidopsis thaliana] gi|25292955|pir||H86229
hypothetical protein [imported] - Arabidopsis thaliana
gi|2160156|gb|AAB60719.1| Strong similarity to S. pombe
leucyl-tRNA synthetase (gb|Z73100). [Arabidopsis
thaliana]
Length = 1084
Score = 192 bits (487), Expect = 3e-48
Identities = 87/121 (71%), Positives = 103/121 (84%)
Frame = +2
Query: 161 KSFARRDRLREIDLKVQKWWEDADVFRSEPGDAPPKPGEKFFGNFPFPYMNGFLHLGHAF 340
KS+ARRDRL EI+ V+KWWED DVFR+E + PKPGEKFF FPFPYMNG+LH+GHAF
Sbjct: 6 KSYARRDRLLEIEATVRKWWEDEDVFRAESCENLPKPGEKFFSTFPFPYMNGYLHIGHAF 65
Query: 341 SVSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPKEGEEEQ 520
S+SK++FA+A+HRLRGANVLLPF FHCTGMPIKASADKL REI++FG+PPVF E +
Sbjct: 66 SLSKVDFASAYHRLRGANVLLPFGFHCTGMPIKASADKLRREIEQFGNPPVFTAEDTTKV 125
Query: 521 P 523
P
Sbjct: 126 P 126
>ref|NP_787968.1| CG33123-PA [Drosophila melanogaster] gi|22945284|gb|AAF51096.2|
CG33123-PA [Drosophila melanogaster]
Length = 1182
Score = 133 bits (334), Expect = 1e-30
Identities = 67/114 (58%), Positives = 81/114 (70%), Gaps = 1/114 (0%)
Frame = +2
Query: 185 LREIDLKVQKWWEDADVFRSEPGDAPPK-PGEKFFGNFPFPYMNGFLHLGHAFSVSKLEF 361
L++I+ +VQ+ WE V S+ AP K EKFF FPFPYMNG LHLGH FS+SK E+
Sbjct: 15 LQKIEREVQQRWEAERVHESDAPTAPKKRQAEKFFVTFPFPYMNGRLHLGHTFSLSKAEY 74
Query: 362 AAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPKEGEEEQP 523
+ +HRL+G VL PF FHCTGMPIKA ADKL RE+++FG PP FP E EE P
Sbjct: 75 SMRYHRLKGRRVLWPFGFHCTGMPIKACADKLTRELEQFGFPPQFP-ETEEVVP 127
>gb|AAM50317.1| SD07726p [Drosophila melanogaster]
Length = 1182
Score = 133 bits (334), Expect = 1e-30
Identities = 67/114 (58%), Positives = 81/114 (70%), Gaps = 1/114 (0%)
Frame = +2
Query: 185 LREIDLKVQKWWEDADVFRSEPGDAPPK-PGEKFFGNFPFPYMNGFLHLGHAFSVSKLEF 361
L++I+ +VQ+ WE V S+ AP K EKFF FPFPYMNG LHLGH FS+SK E+
Sbjct: 15 LQKIEREVQQRWEAERVHESDAPTAPKKRQAEKFFVTFPFPYMNGRLHLGHTFSLSKAEY 74
Query: 362 AAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPKEGEEEQP 523
+ +HRL+G VL PF FHCTGMPIKA ADKL RE+++FG PP FP E EE P
Sbjct: 75 SMRYHRLKGRRVLWPFGFHCTGMPIKACADKLTRELEQFGFPPQFP-ETEEVVP 127
>ref|NP_497837.1| Leucyl tRNA Synthetase LRS-1 (134.5 kD) (lrs-1) [Caenorhabditis
elegans] gi|6226710|sp|Q09996|SYLC_CAEEL Leucyl-tRNA
synthetase (Leucine--tRNA ligase) (LeuRS)
gi|7506790|pir||T19334 hypothetical protein R74.1 -
Caenorhabditis elegans gi|3874391|emb|CAA86751.1| C.
elegans LRS-1 protein (corresponding sequence R74.1)
[Caenorhabditis elegans] gi|3879166|emb|CAA85280.1| C.
elegans LRS-1 protein (corresponding sequence R74.1)
[Caenorhabditis elegans]
Length = 1186
Score = 129 bits (324), Expect = 2e-29
Identities = 65/112 (58%), Positives = 77/112 (68%)
Frame = +2
Query: 182 RLREIDLKVQKWWEDADVFRSEPGDAPPKPGEKFFGNFPFPYMNGFLHLGHAFSVSKLEF 361
+L+EI+ +Q+ WE F ++ D KP K+ FPFPYMNG LHLGH FS SK EF
Sbjct: 13 QLQEIEKSIQELWESKKAFEADARD-DGKP--KYLVTFPFPYMNGRLHLGHTFSASKCEF 69
Query: 362 AAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPKEGEEE 517
AA F RL+G VL PF FHCTGMPIKA ADKL RE+Q FG PP FP++ EE
Sbjct: 70 AAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFPEDVVEE 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,809,392
Number of Sequences: 1393205
Number of extensions: 14981016
Number of successful extensions: 167973
Number of sequences better than 10.0: 1947
Number of HSP's better than 10.0 without gapping: 83728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145581
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
