Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006176A_C01 KMC006176A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189197.1| unknown protein; protein id: At3g25690.1 [Arabi... 113 1e-24
dbj|BAB03089.1| contains similarity to pherophorin~gene_id:T5M7.... 113 1e-24
ref|NP_193591.1| unknown protein; protein id: At4g18570.1 [Arabi... 96 2e-19
gb|AAM91093.1| AT4g18560/F28J12_220 [Arabidopsis thaliana] gi|28... 96 2e-19
gb|AAL10493.1| At1g48280/F11A17_25 [Arabidopsis thaliana] gi|196... 93 1e-18
>ref|NP_189197.1| unknown protein; protein id: At3g25690.1 [Arabidopsis thaliana]
Length = 939
Score = 113 bits (282), Expect = 1e-24
Identities = 55/90 (61%), Positives = 69/90 (76%)
Frame = -3
Query: 489 EWMLDNGIIGKIKIGSVKLAXNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQF 310
+W+ D G++GKIK+ SV+LA YMKRVA EL + S DKDP +++LLQGVRFAFR+HQF
Sbjct: 839 DWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQF 898
Query: 309 AGGFDAETMHAFEELRNLASLLNQT*ENGD 220
AGGFDAE+M AFEELR+ A E+GD
Sbjct: 899 AGGFDAESMKAFEELRSRAKT-----ESGD 923
>dbj|BAB03089.1| contains similarity to pherophorin~gene_id:T5M7.14 [Arabidopsis
thaliana] gi|28071265|dbj|BAC55960.1| actin binding
protein [Arabidopsis thaliana]
Length = 1004
Score = 113 bits (282), Expect = 1e-24
Identities = 55/90 (61%), Positives = 69/90 (76%)
Frame = -3
Query: 489 EWMLDNGIIGKIKIGSVKLAXNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQF 310
+W+ D G++GKIK+ SV+LA YMKRVA EL + S DKDP +++LLQGVRFAFR+HQF
Sbjct: 904 DWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQF 963
Query: 309 AGGFDAETMHAFEELRNLASLLNQT*ENGD 220
AGGFDAE+M AFEELR+ A E+GD
Sbjct: 964 AGGFDAESMKAFEELRSRAKT-----ESGD 988
>ref|NP_193591.1| unknown protein; protein id: At4g18570.1 [Arabidopsis thaliana]
gi|7486298|pir||T04552 hypothetical protein F28J12.220 -
Arabidopsis thaliana gi|2832661|emb|CAA16736.1|
pherophorin - like protein [Arabidopsis thaliana]
gi|7268650|emb|CAB78858.1| pherophorin-like protein
[Arabidopsis thaliana]
Length = 637
Score = 95.9 bits (237), Expect = 2e-19
Identities = 48/79 (60%), Positives = 60/79 (75%)
Frame = -3
Query: 489 EWMLDNGIIGKIKIGSVKLAXNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQF 310
+WML+ GI +IK+ SVKLA YMKRV+ EL+A P + +++QGVRFAFR+HQF
Sbjct: 538 DWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEG--GGPEEEELIVQGVRFAFRVHQF 595
Query: 309 AGGFDAETMHAFEELRNLA 253
AGGFDAETM AFEELR+ A
Sbjct: 596 AGGFDAETMKAFEELRDKA 614
>gb|AAM91093.1| AT4g18560/F28J12_220 [Arabidopsis thaliana]
gi|28416477|gb|AAO42769.1| At4g18560/F28J12_220
[Arabidopsis thaliana]
Length = 642
Score = 95.9 bits (237), Expect = 2e-19
Identities = 48/79 (60%), Positives = 60/79 (75%)
Frame = -3
Query: 489 EWMLDNGIIGKIKIGSVKLAXNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQF 310
+WML+ GI +IK+ SVKLA YMKRV+ EL+A P + +++QGVRFAFR+HQF
Sbjct: 543 DWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEG--GGPEEEELIVQGVRFAFRVHQF 600
Query: 309 AGGFDAETMHAFEELRNLA 253
AGGFDAETM AFEELR+ A
Sbjct: 601 AGGFDAETMKAFEELRDKA 619
>gb|AAL10493.1| At1g48280/F11A17_25 [Arabidopsis thaliana]
gi|19699351|gb|AAL91285.1| At1g48280/F11A17_25
[Arabidopsis thaliana]
Length = 200
Score = 93.2 bits (230), Expect = 1e-18
Identities = 45/76 (59%), Positives = 57/76 (74%)
Frame = -3
Query: 489 EWMLDNGIIGKIKIGSVKLAXNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQF 310
EWMLD+G+I KIK S+KLA YM RVA ELQ+ LD++ + +LLQGVRFA+R HQF
Sbjct: 106 EWMLDSGMICKIKRASIKLAKTYMNRVANELQSARNLDRESTKEALLLQGVRFAYRTHQF 165
Query: 309 AGGFDAETMHAFEELR 262
AGG D ET+ A EE++
Sbjct: 166 AGGLDPETLCALEEIK 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,405,551
Number of Sequences: 1393205
Number of extensions: 7103820
Number of successful extensions: 12807
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12801
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
