Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006168A_C01 KMC006168A_c01
(749 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175481.1| unknown protein; protein id: At1g50660.1 [Arabi... 62 7e-09
dbj|BAB02816.1| gb|AAF00675.1~gene_id:MQC12.10~similar to unknow... 57 2e-07
ref|NP_188670.1| unknown protein; protein id: At3g20350.1 [Arabi... 57 2e-07
pir||S53592 TyB protein - yeast (Saccharomyces cerevisiae) retro... 32 7.4
ref|NP_058138.1| TyB Gag-Pol protein; Ydr034c-dp [Saccharomyces ... 32 7.4
>ref|NP_175481.1| unknown protein; protein id: At1g50660.1 [Arabidopsis thaliana]
gi|25405391|pir||C96543 unknown protein [imported] -
Arabidopsis thaliana gi|9454546|gb|AAF87869.1|AC012561_2
Unknown protein [Arabidopsis thaliana]
gi|12322324|gb|AAG51180.1|AC079279_1 unknown protein
[Arabidopsis thaliana]
Length = 725
Score = 62.4 bits (150), Expect = 7e-09
Identities = 30/41 (73%), Positives = 38/41 (92%), Gaps = 2/41 (4%)
Frame = -1
Query: 737 GMKGCI--PRGALKNSLKAKLLEARLESQRVQIRHVLKQKI 621
GMKGCI PRGA K+SLK+KL+EAR+ESQ+VQ++HVLKQ+I
Sbjct: 685 GMKGCIEWPRGAQKSSLKSKLIEARIESQKVQLKHVLKQRI 725
>dbj|BAB02816.1| gb|AAF00675.1~gene_id:MQC12.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 495
Score = 57.4 bits (137), Expect = 2e-07
Identities = 28/41 (68%), Positives = 35/41 (85%), Gaps = 2/41 (4%)
Frame = -1
Query: 737 GMKGCI--PRGALKNSLKAKLLEARLESQRVQIRHVLKQKI 621
G KGCI PRGA KNSLK KL+EA++ESQ+VQ++HVL+ KI
Sbjct: 455 GRKGCIEWPRGAHKNSLKTKLIEAQIESQKVQLKHVLEHKI 495
>ref|NP_188670.1| unknown protein; protein id: At3g20350.1 [Arabidopsis thaliana]
Length = 673
Score = 57.4 bits (137), Expect = 2e-07
Identities = 28/41 (68%), Positives = 35/41 (85%), Gaps = 2/41 (4%)
Frame = -1
Query: 737 GMKGCI--PRGALKNSLKAKLLEARLESQRVQIRHVLKQKI 621
G KGCI PRGA KNSLK KL+EA++ESQ+VQ++HVL+ KI
Sbjct: 633 GRKGCIEWPRGAHKNSLKTKLIEAQIESQKVQLKHVLEHKI 673
>pir||S53592 TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon
Ty2.C
Length = 1771
Score = 32.3 bits (72), Expect = 7.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 IFRQHLFSKMNRKSKRSQHSSYLFLSR-DHRSSSTSTTNLQYKSTTNSKP 173
I+ ++ +N+ S+ QHS Y +SR +++T T Y+ T +SKP
Sbjct: 342 IYDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYQRTNSSKP 391
>ref|NP_058138.1| TyB Gag-Pol protein; Ydr034c-dp [Saccharomyces cerevisiae]
gi|2120072|pir||S69948 TyB protein - yeast
(Saccharomyces cerevisiae) retrotransposon Ty2.DR
gi|2058361|emb|CAA98857.1| TY2B [Saccharomyces
cerevisiae] gi|3417407|emb|CAA98861.1| TY2B
[Saccharomyces cerevisiae]
Length = 1770
Score = 32.3 bits (72), Expect = 7.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 IFRQHLFSKMNRKSKRSQHSSYLFLSR-DHRSSSTSTTNLQYKSTTNSKP 173
I+ ++ +N+ S+ QHS Y +SR +++T T Y+ T +SKP
Sbjct: 342 IYDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYQRTNSSKP 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,608,915
Number of Sequences: 1393205
Number of extensions: 12364010
Number of successful extensions: 24174
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24167
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
