Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006155A_C02 KMC006155A_c02
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565478.1| Expressed protein; protein id: At2g20585.1, sup... 53 2e-06
ref|NP_564308.1| Expressed protein; protein id: At1g28395.1, sup... 51 9e-06
dbj|BAB17206.1| OSJNBa0086P08.16 [Oryza sativa (japonica cultiva... 47 1e-04
dbj|BAB89461.1| OSJNBb0021A09.13 [Oryza sativa (japonica cultiva... 33 2.5
emb|CAD41108.1| OSJNBb0011N17.25 [Oryza sativa (japonica cultiva... 32 5.6
>ref|NP_565478.1| Expressed protein; protein id: At2g20585.1, supported by cDNA:
15689., supported by cDNA: gi_15982776 [Arabidopsis
thaliana] gi|15982777|gb|AAL09736.1| unknown protein
[Arabidopsis thaliana] gi|20198036|gb|AAM15363.1|
Expressed protein [Arabidopsis thaliana]
gi|21553678|gb|AAM62771.1| unknown [Arabidopsis
thaliana] gi|21655277|gb|AAM65350.1| At2g20587/At2g20587
[Arabidopsis thaliana]
Length = 100
Score = 52.8 bits (125), Expect = 2e-06
Identities = 23/37 (62%), Positives = 30/37 (80%)
Frame = -3
Query: 512 PVQLSFCVESMKPFHTATAFALMNSMLFVSSRSSGWL 402
PV+LSFCVES+ P+H+ATA ALM S L +S ++ GWL
Sbjct: 56 PVELSFCVESLLPYHSATASALMTSKLSISGQTYGWL 92
>ref|NP_564308.1| Expressed protein; protein id: At1g28395.1, supported by cDNA:
14314. [Arabidopsis thaliana] gi|21553431|gb|AAM62524.1|
unknown [Arabidopsis thaliana]
Length = 95
Score = 50.8 bits (120), Expect = 9e-06
Identities = 25/37 (67%), Positives = 30/37 (80%)
Frame = -3
Query: 512 PVQLSFCVESMKPFHTATAFALMNSMLFVSSRSSGWL 402
PV+LS CVE+M P+HTATA AL+NSML VS R GW+
Sbjct: 53 PVELSCCVETMLPYHTATASALLNSMLSVSRR--GWI 87
>dbj|BAB17206.1| OSJNBa0086P08.16 [Oryza sativa (japonica cultivar-group)]
Length = 95
Score = 47.0 bits (110), Expect = 1e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Frame = -3
Query: 512 PVQLSFCVESMKPFHTATAFALMNSMLFVSSRSSGWL 402
PV+LS CVES+ P H+ATA A M SML V + GWL
Sbjct: 50 PVELSVCVESLLPLHSATAAARMTSMLAVPGQGLGWL 86
>dbj|BAB89461.1| OSJNBb0021A09.13 [Oryza sativa (japonica cultivar-group)]
Length = 116
Score = 32.7 bits (73), Expect = 2.5
Identities = 19/47 (40%), Positives = 25/47 (52%)
Frame = -3
Query: 512 PVQLSFCVESMKPFHTATAFALMNSMLFVSSRSSGWLP*GS*TSVGF 372
PV+ + P H+ATA AL+ SML + S GWL + VGF
Sbjct: 58 PVEALGGAHGLMPLHSATASALLTSMLGLKPGSWGWL-----SEVGF 99
>emb|CAD41108.1| OSJNBb0011N17.25 [Oryza sativa (japonica cultivar-group)]
Length = 85
Score = 31.6 bits (70), Expect = 5.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 373 NPTDV*LP*GSQPELRLDTKSIEFINAKAVAVWNGFMD 486
NPT+V LP S+P T+SIE I A A + +D
Sbjct: 18 NPTEVHLPTKSEPSSSSTTRSIEIIQASRYAAYQKMLD 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,851,003
Number of Sequences: 1393205
Number of extensions: 8443652
Number of successful extensions: 21380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21380
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
