Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006152A_C01 KMC006152A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42980.1| putative alpha-soluble NSF attachment protein [A... 133 1e-30
ref|NP_191178.1| alpha-soluble NSF attachment protein; protein i... 133 1e-30
sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein (Alpha... 132 2e-30
sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein (Alpha... 128 3e-29
ref|NP_191204.1| alpha-soluble NSF attachment protein-like; prot... 77 8e-14
>dbj|BAC42980.1| putative alpha-soluble NSF attachment protein [Arabidopsis
thaliana]
Length = 289
Score = 133 bits (334), Expect = 1e-30
Identities = 62/76 (81%), Positives = 73/76 (95%)
Frame = -3
Query: 503 HALERYQELDPTFSGTREYRLLADIAAALDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLR 324
+ALE+YQ+LDPTF+GTRE + LAD+A+A+DEED+ KFTDVVK+FDSMTPLDSWKTT+LLR
Sbjct: 214 NALEKYQDLDPTFTGTRECKFLADLASAIDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLR 273
Query: 323 VKEKLKAKELEEDDLT 276
VKEKLKAKELEEDDLT
Sbjct: 274 VKEKLKAKELEEDDLT 289
>ref|NP_191178.1| alpha-soluble NSF attachment protein; protein id: At3g56190.1,
supported by cDNA: gi_6013203 [Arabidopsis thaliana]
gi|18203446|sp|Q9SPE6|SNA2_ARATH Alpha-soluble NSF
attachment protein 2 (Alpha-SNAP2)
(N-ethylmaleimide-sensitive factor attachment protein,
alpha 2) gi|11357166|pir||T47736 alpha-soluble NSF
attachment protein - Arabidopsis thaliana
gi|6013204|gb|AAF01284.1|AF177989_1 alpha-soluble NSF
attachment protein; alpha-SNAP [Arabidopsis thaliana]
gi|7572917|emb|CAB87418.1| alpha-soluble NSF attachment
protein [Arabidopsis thaliana]
Length = 289
Score = 133 bits (334), Expect = 1e-30
Identities = 62/76 (81%), Positives = 73/76 (95%)
Frame = -3
Query: 503 HALERYQELDPTFSGTREYRLLADIAAALDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLR 324
+ALE+YQ+LDPTF+GTRE + LAD+A+A+DEED+ KFTDVVK+FDSMTPLDSWKTT+LLR
Sbjct: 214 NALEKYQDLDPTFTGTRECKFLADLASAIDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLR 273
Query: 323 VKEKLKAKELEEDDLT 276
VKEKLKAKELEEDDLT
Sbjct: 274 VKEKLKAKELEEDDLT 289
>sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein (Alpha-SNAP)
(N-ethylmaleimide-sensitive factor attachment protein,
alpha) gi|11362202|pir||T50776 hypothetical protein
[imported] - Vitis vinifera gi|1854386|dbj|BAA19246.1|
similar to soluble NSF attachment protein [Vitis
vinifera]
Length = 289
Score = 132 bits (333), Expect = 2e-30
Identities = 63/76 (82%), Positives = 72/76 (93%)
Frame = -3
Query: 503 HALERYQELDPTFSGTREYRLLADIAAALDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLR 324
+AL+RYQE+DPTFSGTREY+LL D+AAA+DEEDVVKFTD VK+FDSMT LD+WKTTLLLR
Sbjct: 214 NALDRYQEMDPTFSGTREYKLLVDLAAAVDEEDVVKFTDAVKEFDSMTQLDAWKTTLLLR 273
Query: 323 VKEKLKAKELEEDDLT 276
VKE +KAKELEEDDLT
Sbjct: 274 VKEAIKAKELEEDDLT 289
>sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein (Alpha-SNAP)
(N-ethylmaleimide-sensitive factor attachment protein,
alpha) gi|11358953|pir||T50777 soluble NSF attachment
protein [imported] - potato
gi|7141302|gb|AAF37280.1|AF225512_1 soluble NSF
attachment protein [Solanum tuberosum]
Length = 288
Score = 128 bits (322), Expect = 3e-29
Identities = 62/76 (81%), Positives = 70/76 (91%)
Frame = -3
Query: 503 HALERYQELDPTFSGTREYRLLADIAAALDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLR 324
+ALERYQELDPTFSGTRE +LL D+AAA+DEEDV KFTD VK++DSMT LD+W+TTLLLR
Sbjct: 213 NALERYQELDPTFSGTRECKLLVDLAAAIDEEDVAKFTDAVKEYDSMTQLDAWRTTLLLR 272
Query: 323 VKEKLKAKELEEDDLT 276
VKE LKAKELEEDDLT
Sbjct: 273 VKETLKAKELEEDDLT 288
>ref|NP_191204.1| alpha-soluble NSF attachment protein-like; protein id: At3g56450.1
[Arabidopsis thaliana] gi|28201894|sp|Q9LXZ5|SNA1_ARATH
Alpha-soluble NSF attachment protein 1 (Alpha-SNAP1)
(N-ethylmaleimide-sensitive factor attachment protein,
alpha 1) gi|11357167|pir||T49046 alpha-soluble NSF
attachment protein-like - Arabidopsis thaliana
gi|7594523|emb|CAB88048.1| alpha-soluble NSF attachment
protein-like [Arabidopsis thaliana]
Length = 381
Score = 77.4 bits (189), Expect = 8e-14
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = -3
Query: 503 HALERYQELDPTFSGTREYRLLADIAAALDEEDVVKFTDVVKDFDSMTPL 354
+ALE+YQ+LDPTFSGTRE + LAD+A+A+DEED+ KFTDV K+ DS++PL
Sbjct: 265 NALEKYQDLDPTFSGTRECKFLADLASAIDEEDIAKFTDVSKEIDSVSPL 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,061,796
Number of Sequences: 1393205
Number of extensions: 8120417
Number of successful extensions: 23904
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 21426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23292
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
