Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006145A_C01 KMC006145A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD39596.1|AC007858_10 Contains similarity to gb|CAB16841 tri... 163 1e-39
gb|AAG13076.1|AC023754_14 Unknown protein - partial protein [Ara... 158 5e-38
ref|NP_177666.1| unknown protein; protein id: At1g75310.1 [Arabi... 158 5e-38
pir||T51618 auxilin-like protein [imported] - Arabidopsis thalia... 157 1e-37
ref|NP_195370.1| trichohyalin like protein; protein id: At4g3652... 148 5e-35
>gb|AAD39596.1|AC007858_10 Contains similarity to gb|CAB16841 trichohyalin like protein from
Arabidopsis thaliana. [Oryza sativa]
Length = 1442
Score = 163 bits (412), Expect = 1e-39
Identities = 76/103 (73%), Positives = 91/103 (87%)
Frame = -2
Query: 542 ERNRLAETXDAEVRRWSSGKEGNLRALLSTLPYILGHDSGXPPIPLTEVITSAAVKKAYR 363
E++RL+E D E++RWS+GKEGNLRALLSTL YILG DSG P+PLTE+IT+AAVKKAYR
Sbjct: 1340 EKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELITAAAVKKAYR 1399
Query: 362 KATLCVHPDQLQPRGASVQHKYTCEKVFDLLKEAWTQFNSEER 234
KATLCVHPD+LQ RGA+++ KY CEKVFDLLK+AW +F SEER
Sbjct: 1400 KATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTSEER 1442
>gb|AAG13076.1|AC023754_14 Unknown protein - partial protein [Arabidopsis thaliana]
Length = 1393
Score = 158 bits (399), Expect = 5e-38
Identities = 75/103 (72%), Positives = 89/103 (85%)
Frame = -2
Query: 542 ERNRLAETXDAEVRRWSSGKEGNLRALLSTLPYILGHDSGXPPIPLTEVITSAAVKKAYR 363
ERNRLAE DA+V+RWSSGKE NLRAL+STL YILG +SG PIPLT++++SA+V+KAYR
Sbjct: 1291 ERNRLAEALDADVKRWSSGKENNLRALISTLQYILGAESGWKPIPLTDLVSSASVRKAYR 1350
Query: 362 KATLCVHPDQLQPRGASVQHKYTCEKVFDLLKEAWTQFNSEER 234
KATL VHPD+LQ RGAS Q KY CEKVFDLLKEAW +F ++ER
Sbjct: 1351 KATLYVHPDKLQQRGASTQQKYICEKVFDLLKEAWNKFGADER 1393
>ref|NP_177666.1| unknown protein; protein id: At1g75310.1 [Arabidopsis thaliana]
Length = 1448
Score = 158 bits (399), Expect = 5e-38
Identities = 75/103 (72%), Positives = 89/103 (85%)
Frame = -2
Query: 542 ERNRLAETXDAEVRRWSSGKEGNLRALLSTLPYILGHDSGXPPIPLTEVITSAAVKKAYR 363
ERNRLAE DA+V+RWSSGKE NLRAL+STL YILG +SG PIPLT++++SA+V+KAYR
Sbjct: 1346 ERNRLAEALDADVKRWSSGKENNLRALISTLQYILGAESGWKPIPLTDLVSSASVRKAYR 1405
Query: 362 KATLCVHPDQLQPRGASVQHKYTCEKVFDLLKEAWTQFNSEER 234
KATL VHPD+LQ RGAS Q KY CEKVFDLLKEAW +F ++ER
Sbjct: 1406 KATLYVHPDKLQQRGASTQQKYICEKVFDLLKEAWNKFGADER 1448
>pir||T51618 auxilin-like protein [imported] - Arabidopsis thaliana
gi|3286691|emb|CAA07520.1| auxilin-like protein
[Arabidopsis thaliana]
Length = 452
Score = 157 bits (396), Expect = 1e-37
Identities = 75/103 (72%), Positives = 88/103 (84%)
Frame = -2
Query: 542 ERNRLAETXDAEVRRWSSGKEGNLRALLSTLPYILGHDSGXPPIPLTEVITSAAVKKAYR 363
ERNRLAE DA+V+RWSSGKE NLRAL+STL YILG +SG PIPLT++++SA+V+KAYR
Sbjct: 350 ERNRLAEALDADVKRWSSGKENNLRALISTLQYILGAESGWKPIPLTDLVSSASVRKAYR 409
Query: 362 KATLCVHPDQLQPRGASVQHKYTCEKVFDLLKEAWTQFNSEER 234
KATL VHPD+LQ RGAS Q KY CEKVFDLLKEAW +F +ER
Sbjct: 410 KATLYVHPDKLQQRGASTQQKYICEKVFDLLKEAWNKFGVDER 452
>ref|NP_195370.1| trichohyalin like protein; protein id: At4g36520.1 [Arabidopsis
thaliana] gi|25407733|pir||B85431 trichohyalin like
protein [imported] - Arabidopsis thaliana
gi|4006911|emb|CAB16841.1| trichohyalin like protein
[Arabidopsis thaliana] gi|7270600|emb|CAB80318.1|
trichohyalin like protein [Arabidopsis thaliana]
Length = 1432
Score = 148 bits (373), Expect = 5e-35
Identities = 71/92 (77%), Positives = 81/92 (87%)
Frame = -2
Query: 542 ERNRLAETXDAEVRRWSSGKEGNLRALLSTLPYILGHDSGXPPIPLTEVITSAAVKKAYR 363
+R R+AET D EV+RWSSGKEGN+RALLSTL YILG +SG P+PLTEVITSAAVK+AYR
Sbjct: 1298 DRVRIAETLDTEVKRWSSGKEGNIRALLSTLQYILGPESGWQPLPLTEVITSAAVKRAYR 1357
Query: 362 KATLCVHPDQLQPRGASVQHKYTCEKVFDLLK 267
KATLCVHPD+LQ RGA++ KY CEKVFDLLK
Sbjct: 1358 KATLCVHPDKLQQRGANIHQKYICEKVFDLLK 1389
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,620,895
Number of Sequences: 1393205
Number of extensions: 12041640
Number of successful extensions: 26690
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 25778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26668
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
