Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006136A_C01 KMC006136A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL09733.1| At1g76160/T23E18_10 [Arabidopsis thaliana] 45 4e-09
ref|NP_177743.1| pectinesterase (pectin methylesterase), putativ... 45 4e-09
emb|CAA65634.1| PS60 [Nicotiana tabacum] 48 9e-09
gb|AAM97070.1| pectinesterase, putative [Arabidopsis thaliana] g... 44 2e-08
ref|NP_173603.1| pectinesterase (pectin methylesterase), putativ... 45 3e-08
>gb|AAL09733.1| At1g76160/T23E18_10 [Arabidopsis thaliana]
Length = 541
Score = 45.4 bits (106), Expect(2) = 4e-09
Identities = 20/26 (76%), Positives = 21/26 (79%)
Frame = -3
Query: 452 NLRSEFWARPYLGPPFYMRVYTTSTS 375
NLRSEFWAR YLG Y+RVYT STS
Sbjct: 491 NLRSEFWARQYLGQQLYLRVYTPSTS 516
Score = 35.8 bits (81), Expect(2) = 4e-09
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -1
Query: 373 IRDEYPIPKNALLCG 329
+RDEYPIPKNALLCG
Sbjct: 517 LRDEYPIPKNALLCG 531
>ref|NP_177743.1| pectinesterase (pectin methylesterase), putative; protein id:
At1g76160.1, supported by cDNA: gi_15982770 [Arabidopsis
thaliana] gi|25285549|pir||E96789 protein T23E18.10
[imported] - Arabidopsis thaliana
gi|6573725|gb|AAF17645.1|AC009978_21 T23E18.10
[Arabidopsis thaliana]
Length = 541
Score = 45.4 bits (106), Expect(2) = 4e-09
Identities = 20/26 (76%), Positives = 21/26 (79%)
Frame = -3
Query: 452 NLRSEFWARPYLGPPFYMRVYTTSTS 375
NLRSEFWAR YLG Y+RVYT STS
Sbjct: 491 NLRSEFWARQYLGQQLYLRVYTPSTS 516
Score = 35.8 bits (81), Expect(2) = 4e-09
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -1
Query: 373 IRDEYPIPKNALLCG 329
+RDEYPIPKNALLCG
Sbjct: 517 LRDEYPIPKNALLCG 531
>emb|CAA65634.1| PS60 [Nicotiana tabacum]
Length = 540
Score = 47.8 bits (112), Expect(2) = 9e-09
Identities = 21/26 (80%), Positives = 22/26 (83%)
Frame = -3
Query: 452 NLRSEFWARPYLGPPFYMRVYTTSTS 375
NLR+EFWAR YLG YMRVYTTSTS
Sbjct: 490 NLRTEFWARQYLGQQLYMRVYTTSTS 515
Score = 32.3 bits (72), Expect(2) = 9e-09
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -1
Query: 373 IRDEYPIPKNALLCG 329
+RDEYPIP+NA LCG
Sbjct: 516 LRDEYPIPRNARLCG 530
>gb|AAM97070.1| pectinesterase, putative [Arabidopsis thaliana]
gi|23198038|gb|AAN15546.1| pectinesterase, putative
[Arabidopsis thaliana]
Length = 541
Score = 43.5 bits (101), Expect(2) = 2e-08
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -3
Query: 452 NLRSEFWARPYLGPPFYMRVYTTSTS 375
NLR EFWAR YLG Y+RVYT STS
Sbjct: 491 NLRPEFWARQYLGQQLYLRVYTPSTS 516
Score = 35.8 bits (81), Expect(2) = 2e-08
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -1
Query: 373 IRDEYPIPKNALLCG 329
+RDEYPIPKNALLCG
Sbjct: 517 LRDEYPIPKNALLCG 531
>ref|NP_173603.1| pectinesterase (pectin methylesterase), putative; protein id:
At1g21850.1 [Arabidopsis thaliana]
gi|25285548|pir||H86351 protein T26F17.6 [imported] -
Arabidopsis thaliana
gi|6552745|gb|AAF16544.1|AC013482_18 T26F17.6
[Arabidopsis thaliana]
Length = 551
Score = 44.7 bits (104), Expect(2) = 3e-08
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = -3
Query: 452 NLRSEFWARPYLGPPFYMRVYTTSTS 375
NLRSE W R YLG FYMRVYT STS
Sbjct: 491 NLRSELWERQYLGQQFYMRVYTPSTS 516
Score = 33.5 bits (75), Expect(2) = 3e-08
Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 373 IRDEYPIPKNALLCG--PGQWETHQTPLS 293
+RDEY IPKNALLCG G T PLS
Sbjct: 517 LRDEYLIPKNALLCGRATGHHTTTPGPLS 545
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,884,516
Number of Sequences: 1393205
Number of extensions: 10697125
Number of successful extensions: 26277
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 25519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26261
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
