Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006130A_C01 KMC006130A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46278|CG2B_MEDVA G2/mitotic-specific cyclin 2 (B-like cyclin... 36 0.27
sp|P30278|CG2B_MEDSA G2/mitotic-specific cyclin 2 (B-like cyclin... 36 0.27
gb|AAF17635.1|AC009978_11 T23E18.24 [Arabidopsis thaliana] 35 0.61
ref|NP_177758.2| Cyclin B2;4; protein id: At1g76310.1 [Arabidops... 35 0.61
pir||F96790 hypothetical protein F15M4.19 [imported] - Arabidops... 35 0.61
>sp|P46278|CG2B_MEDVA G2/mitotic-specific cyclin 2 (B-like cyclin) (CYCMS2)
gi|7438515|pir||T09706 cyclin cycMs2, B-type - alfalfa
gi|914863|emb|CAA57560.1| cycMs2 [Medicago sativa subsp.
x varia]
Length = 434
Score = 35.8 bits (81), Expect = 0.27
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = -2
Query: 94 LLHIDTCDANNPLRVVYYIEDL 29
+L ID+CDANN L VV YIEDL
Sbjct: 159 ILDIDSCDANNSLAVVEYIEDL 180
>sp|P30278|CG2B_MEDSA G2/mitotic-specific cyclin 2 (B-like cyclin) (CycMs2)
gi|322706|pir||S29925 cyclin 2 - alfalfa (fragment)
gi|19599|emb|CAA48675.1| cyclin [Medicago sativa]
Length = 328
Score = 35.8 bits (81), Expect = 0.27
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = -2
Query: 94 LLHIDTCDANNPLRVVYYIEDL 29
+L ID+CDANN L VV YIEDL
Sbjct: 53 ILDIDSCDANNSLAVVEYIEDL 74
>gb|AAF17635.1|AC009978_11 T23E18.24 [Arabidopsis thaliana]
Length = 485
Score = 34.7 bits (78), Expect = 0.61
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -2
Query: 97 SLLHIDTCDANNPLRVVYYIEDL 29
S++ ID+CD NNPL VV YI D+
Sbjct: 159 SVMDIDSCDKNNPLSVVEYINDI 181
>ref|NP_177758.2| Cyclin B2;4; protein id: At1g76310.1 [Arabidopsis thaliana]
Length = 431
Score = 34.7 bits (78), Expect = 0.61
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -2
Query: 97 SLLHIDTCDANNPLRVVYYIEDL 29
S++ ID+CD NNPL VV YI D+
Sbjct: 159 SVMDIDSCDKNNPLSVVEYINDI 181
>pir||F96790 hypothetical protein F15M4.19 [imported] - Arabidopsis thaliana
gi|6554487|gb|AAF16669.1|AC012394_18 putative
G2/mitotic-specific cyclin 1 (B-like cyclin);
75390-77415 [Arabidopsis thaliana]
Length = 418
Score = 34.7 bits (78), Expect = 0.61
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -2
Query: 97 SLLHIDTCDANNPLRVVYYIEDL 29
S++ ID+CD NNPL VV YI D+
Sbjct: 146 SVMDIDSCDKNNPLSVVEYINDI 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,295,146
Number of Sequences: 1393205
Number of extensions: 8158504
Number of successful extensions: 19828
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19824
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
