Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006124A_C01 KMC006124A_c01
(736 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90041.1| B1144G04.32 [Oryza sativa (japonica cultivar-gro... 94 2e-18
pir||T01030 hypothetical protein YUP8H12R.13 - Arabidopsis thali... 93 4e-18
ref|NP_565205.1| expressed protein; protein id: At1g79270.1, sup... 93 4e-18
ref|NP_187912.1| unknown protein; protein id: At3g13060.1 [Arabi... 89 5e-17
gb|AAN06837.1| Putative RNA-binding protein [Oryza sativa (japon... 89 6e-17
>dbj|BAB90041.1| B1144G04.32 [Oryza sativa (japonica cultivar-group)]
Length = 594
Score = 94.0 bits (232), Expect = 2e-18
Identities = 41/56 (73%), Positives = 52/56 (92%)
Frame = -2
Query: 735 ENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYAARTSILDDFEFYESRQKXIQEKK 568
ENN++KPVTNSRDTQEV FPQG EMLNIFKN++ +TSILDDF+FYE+RQK +Q+++
Sbjct: 465 ENNENKPVTNSRDTQEVKFPQGSEMLNIFKNFSCKTSILDDFDFYENRQKVMQDRR 520
>pir||T01030 hypothetical protein YUP8H12R.13 - Arabidopsis thaliana
gi|3152559|gb|AAC17040.1| Similarity to A. thaliana gene
product F21M12.20, gb|AC000132. EST gb|Z25651 comes from
this gene. [Arabidopsis thaliana]
Length = 530
Score = 92.8 bits (229), Expect = 4e-18
Identities = 42/57 (73%), Positives = 52/57 (90%)
Frame = -2
Query: 735 ENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYAARTSILDDFEFYESRQKXIQEKKI 565
ENN++KPVTNSRDTQEV PQG E+LNIFKNYAA+TSILDDF+FYE+R+K + +KK+
Sbjct: 436 ENNENKPVTNSRDTQEVRLPQGNEVLNIFKNYAAKTSILDDFDFYENREKVMVQKKL 492
>ref|NP_565205.1| expressed protein; protein id: At1g79270.1, supported by cDNA:
gi_11908125, supported by cDNA: gi_21280816 [Arabidopsis
thaliana] gi|11908126|gb|AAG41492.1|AF326910_1 unknown
protein [Arabidopsis thaliana]
gi|21280817|gb|AAM44922.1| unknown protein [Arabidopsis
thaliana]
Length = 528
Score = 92.8 bits (229), Expect = 4e-18
Identities = 42/57 (73%), Positives = 52/57 (90%)
Frame = -2
Query: 735 ENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYAARTSILDDFEFYESRQKXIQEKKI 565
ENN++KPVTNSRDTQEV PQG E+LNIFKNYAA+TSILDDF+FYE+R+K + +KK+
Sbjct: 434 ENNENKPVTNSRDTQEVRLPQGNEVLNIFKNYAAKTSILDDFDFYENREKVMVQKKL 490
>ref|NP_187912.1| unknown protein; protein id: At3g13060.1 [Arabidopsis thaliana]
gi|15795138|dbj|BAB02516.1|
gb|AAF35955.1~gene_id:MGH6.21~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 503
Score = 89.4 bits (220), Expect = 5e-17
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = -2
Query: 735 ENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYAARTSILDDFEFYESRQKXIQEKK 568
ENND+KPVTNSRDTQEV QG+EML IFKNY A TSILDDF FYE R+K IQ++K
Sbjct: 376 ENNDNKPVTNSRDTQEVKLEQGIEMLKIFKNYDADTSILDDFGFYEEREKIIQDRK 431
>gb|AAN06837.1| Putative RNA-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 716
Score = 89.0 bits (219), Expect = 6e-17
Identities = 51/114 (44%), Positives = 69/114 (59%)
Frame = -2
Query: 735 ENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYAARTSILDDFEFYESRQKXIQEKKIXQS 556
ENN++KPVTNSRDTQEV+ QG++ML IFK + ++TSILDDF FYE+RQK +QEK++ Q
Sbjct: 582 ENNENKPVTNSRDTQEVNLDQGIQMLKIFKEHVSKTSILDDFAFYENRQKLMQEKRVKQQ 641
Query: 555 IPHTNAQHIDDITNALGSVDLSAVKNMEEEPKLVEKVND*RKYRMMLFIGTAPV 394
++ G A +PKL VN + ++ GTAPV
Sbjct: 642 QIQKQVWDSRAPSSVTGEKQQDAA---TAKPKLPNGVNG--ELKVPAENGTAPV 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,740,774
Number of Sequences: 1393205
Number of extensions: 12239641
Number of successful extensions: 27352
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 26271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27315
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
