Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006119A_C01 KMC006119A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55695.1|AF378892_1 AT4g33220/F4I10_150 [Arabidopsis thaliana] 150 7e-36
ref|NP_567917.1| pectinesterase family; protein id: At4g33220.1,... 150 7e-36
pir||T05202 pectinesterase homolog F4I10.150 - Arabidopsis thali... 150 7e-36
gb|AAK81875.1| pectin methylesterase PME1 [Vitis vinifera] 149 3e-35
sp|Q43062|PME_PRUPE Pectinesterase PPE8B precursor (Pectin methy... 147 6e-35
>gb|AAK55695.1|AF378892_1 AT4g33220/F4I10_150 [Arabidopsis thaliana]
Length = 525
Score = 150 bits (380), Expect = 7e-36
Identities = 69/108 (63%), Positives = 88/108 (80%), Gaps = 2/108 (1%)
Frame = -1
Query: 522 LLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTLFYGEYLNYGA 346
L+P + + +TYLGRPWK YSRTVF+++ MSDVV +GWLEWN F DTLFYGE++NYG
Sbjct: 416 LVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGP 475
Query: 345 GAGVGNRVKWGGYHVLNDS-EAGKFTVNQFIEGNLWLPSTGVAYTGGL 205
G+G+ +RVKW GYHV N+S +A FTV+QFI+GNLWLPSTGV ++ GL
Sbjct: 476 GSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 523
>ref|NP_567917.1| pectinesterase family; protein id: At4g33220.1, supported by cDNA:
gi_14190428 [Arabidopsis thaliana]
Length = 404
Score = 150 bits (380), Expect = 7e-36
Identities = 69/108 (63%), Positives = 88/108 (80%), Gaps = 2/108 (1%)
Frame = -1
Query: 522 LLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTLFYGEYLNYGA 346
L+P + + +TYLGRPWK YSRTVF+++ MSDVV +GWLEWN F DTLFYGE++NYG
Sbjct: 295 LVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGP 354
Query: 345 GAGVGNRVKWGGYHVLNDS-EAGKFTVNQFIEGNLWLPSTGVAYTGGL 205
G+G+ +RVKW GYHV N+S +A FTV+QFI+GNLWLPSTGV ++ GL
Sbjct: 355 GSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 402
>pir||T05202 pectinesterase homolog F4I10.150 - Arabidopsis thaliana
gi|4455336|emb|CAB36796.1| pectinesterase-like protein
[Arabidopsis thaliana] gi|7270270|emb|CAB80039.1|
pectinesterase-like protein [Arabidopsis thaliana]
Length = 477
Score = 150 bits (380), Expect = 7e-36
Identities = 69/108 (63%), Positives = 88/108 (80%), Gaps = 2/108 (1%)
Frame = -1
Query: 522 LLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTLFYGEYLNYGA 346
L+P + + +TYLGRPWK YSRTVF+++ MSDVV +GWLEWN F DTLFYGE++NYG
Sbjct: 368 LVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGP 427
Query: 345 GAGVGNRVKWGGYHVLNDS-EAGKFTVNQFIEGNLWLPSTGVAYTGGL 205
G+G+ +RVKW GYHV N+S +A FTV+QFI+GNLWLPSTGV ++ GL
Sbjct: 428 GSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTFSDGL 475
>gb|AAK81875.1| pectin methylesterase PME1 [Vitis vinifera]
Length = 531
Score = 149 bits (375), Expect = 3e-35
Identities = 67/108 (62%), Positives = 86/108 (79%), Gaps = 2/108 (1%)
Frame = -1
Query: 522 LLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTLFYGEYLNYGA 346
LL SV S +YLGRPWK+YSRT+ M+S++SD + +GWLEWN F DTL+YGEY+NYG
Sbjct: 422 LLASVNSTLSYLGRPWKQYSRTIIMKSYISDAIRPEGWLEWNGDFALDTLYYGEYMNYGP 481
Query: 345 GAGVGNRVKWGGYHVLNDS-EAGKFTVNQFIEGNLWLPSTGVAYTGGL 205
AG+G+RV+W G+H+LN+S +A FTV +FI GNLWLPSTGV Y+ GL
Sbjct: 482 SAGLGSRVQWPGFHLLNNSAQAANFTVTEFIAGNLWLPSTGVKYSAGL 529
>sp|Q43062|PME_PRUPE Pectinesterase PPE8B precursor (Pectin methylesterase) (PE)
gi|1213629|emb|CAA65237.1| pectinesterase [Prunus
persica]
Length = 522
Score = 147 bits (372), Expect = 6e-35
Identities = 70/102 (68%), Positives = 82/102 (79%), Gaps = 2/102 (1%)
Frame = -1
Query: 513 SVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTLFYGEYLNYGAGAG 337
SV S TYLGRPWK YSRTV MQSF+S+V+ +GWLEWN F ++LFYGEY+NYG GAG
Sbjct: 416 SVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAG 475
Query: 336 VGNRVKWGGYHVLNDS-EAGKFTVNQFIEGNLWLPSTGVAYT 214
+G+RVKW GY V N+S +A +TV QFIEGNLWLPSTGV YT
Sbjct: 476 LGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKYT 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,380,800
Number of Sequences: 1393205
Number of extensions: 9820784
Number of successful extensions: 34629
Number of sequences better than 10.0: 401
Number of HSP's better than 10.0 without gapping: 31043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34145
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
