Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006103A_C01 KMC006103A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86291 F7H2.9 protein - Arabidopsis thaliana gi|8927654|gb|... 290 1e-77
ref|NP_563981.1| expressed protein; protein id: At1g15750.1 [Ara... 290 1e-77
gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata] 290 2e-77
ref|NP_178164.1| unknown protein; protein id: At1g80490.1 [Arabi... 289 3e-77
dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica ... 278 4e-74
>pir||G86291 F7H2.9 protein - Arabidopsis thaliana
gi|8927654|gb|AAF82145.1|AC034256_9 Strong similarity to
an unknown protein T21F11.18 gi|6730738 from Arabidopsis
thaliana BAC T21F11 gb|AC018849 and contains multiple WD
PF|00400 domains. ESTs gb|Z34157, gb|AA006273,
gb|AA605431, gb|W43588, gb|W43605, gb|Z34559, gb|R90037,
gb|AI994125 come from this gene
Length = 1153
Score = 290 bits (742), Expect = 1e-77
Identities = 145/150 (96%), Positives = 149/150 (98%)
Frame = +3
Query: 207 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWEEVEKYLSGF 386
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNW+EVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 387 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 566
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 567 LENFRENEQLSKYGDTKSARAIILVELKKL 656
LENFRENEQLSKYGDTKSARAI+LVELKKL
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKL 150
>ref|NP_563981.1| expressed protein; protein id: At1g15750.1 [Arabidopsis thaliana]
gi|15028127|gb|AAK76687.1| unknown protein [Arabidopsis
thaliana] gi|23296857|gb|AAN13188.1| unknown protein
[Arabidopsis thaliana]
Length = 1131
Score = 290 bits (742), Expect = 1e-77
Identities = 145/150 (96%), Positives = 149/150 (98%)
Frame = +3
Query: 207 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWEEVEKYLSGF 386
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNW+EVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 387 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 566
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 567 LENFRENEQLSKYGDTKSARAIILVELKKL 656
LENFRENEQLSKYGDTKSARAI+LVELKKL
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKL 150
>gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata]
Length = 1127
Score = 290 bits (741), Expect = 2e-77
Identities = 144/150 (96%), Positives = 150/150 (100%)
Frame = +3
Query: 207 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWEEVEKYLSGF 386
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNW++VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 387 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 566
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 567 LENFRENEQLSKYGDTKSARAIILVELKKL 656
LENFRENEQLSKYGDTKSAR+I+LVELKKL
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMLVELKKL 150
>ref|NP_178164.1| unknown protein; protein id: At1g80490.1 [Arabidopsis thaliana]
gi|25406669|pir||G96836 unknown protein T21F11.18
[imported] - Arabidopsis thaliana
gi|6730738|gb|AAF27128.1|AC018849_16 unknown protein;
52184-57536 [Arabidopsis thaliana]
Length = 1073
Score = 289 bits (739), Expect = 3e-77
Identities = 144/150 (96%), Positives = 149/150 (99%)
Frame = +3
Query: 207 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWEEVEKYLSGF 386
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNW+EVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 387 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 566
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 567 LENFRENEQLSKYGDTKSARAIILVELKKL 656
LENFRENEQLSKYGDTKSARAI+LVELKKL
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKL 150
>dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 930
Score = 278 bits (712), Expect = 4e-74
Identities = 137/150 (91%), Positives = 148/150 (98%)
Frame = +3
Query: 207 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWEEVEKYLSGF 386
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFE++VH G W+EVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF 60
Query: 387 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 566
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR+KAV+ILVKDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT 120
Query: 567 LENFRENEQLSKYGDTKSARAIILVELKKL 656
LENFRENEQLSKYGDTKSAR+I+L+ELKKL
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMLIELKKL 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,780,555
Number of Sequences: 1393205
Number of extensions: 11808297
Number of successful extensions: 35794
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 34091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35684
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
