Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006099A_C01 KMC006099A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_764816.1| conserved hypothetical protein [Staphylococcus ... 33 1.6
ref|NP_593319.1| hypothetical protein; similar to S. cerevisiae ... 32 3.5
ref|NP_566029.1| F-box protein family, AtFBX5; protein id: At2g4... 31 7.7
gb|AAG10053.2|AF288747_1 putative lactate dehydrogenase [Hypotri... 31 7.7
gb|AAK51810.1| maturase K [Gaultheria foliolosa] 31 7.7
>ref|NP_764816.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228] gi|27315725|gb|AAO04860.1|AE016748_94 conserved
hypothetical protein [Staphylococcus epidermidis ATCC
12228]
Length = 236
Score = 33.5 bits (75), Expect = 1.6
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = -3
Query: 308 INLMRMVLVLPV---FIPRLIQSDRMFQSALLLMMPSIVLFPELQCLVYKPIFKALVLVF 138
INLM ++ +L + F+ LI D S LL + I+L EL + ++L+
Sbjct: 55 INLMGIIALLALLLLFLAFLINGDVNVMSVLLFTIGLILLIVELFVIGAVIGIIGIILIT 114
Query: 137 HALIWIVGINSIDFKGNIVCSLVLSI 60
++I I+G N + GN++ +L+LSI
Sbjct: 115 LSII-ILGDNILLMLGNVIVALILSI 139
>ref|NP_593319.1| hypothetical protein; similar to S. cerevisiae YOR022C; contains
DDHD domain, a putative metal binding site-seen in a
family of probable phospholipases [Schizosaccharomyces
pombe] gi|7490932|pir||T38124 hypothetical protein
SPAC20G8.02 - fission yeast (Schizosaccharomyces pombe)
gi|2094857|emb|CAB08596.1| hypothetical protein; similar
to S. cerevisiae YOR022C; contains DDHD domain, a
putative metal binding site-seen in a family of probably
phospholipases [Schizosaccharomyces pombe]
Length = 757
Score = 32.3 bits (72), Expect = 3.5
Identities = 28/94 (29%), Positives = 41/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 238 NILSDWISLGINTGSTNTILIKLISPTPVFNFPTADS*NKILIATNCHLHD*DQNSRNLH 417
N+LS G+ +G NT+++K +S VFN TADS HD Q + N+
Sbjct: 658 NVLS-----GLRSGIANTLILKSLSYASVFNEATADS------------HDESQGAENIR 700
Query: 418 YECSPWYYSLQINSLKE------QLQEPHWDQSY 501
W+ ++ L + LQE D SY
Sbjct: 701 ----DWHIDERMYRLNKTGRIDFMLQEGALDTSY 730
>ref|NP_566029.1| F-box protein family, AtFBX5; protein id: At2g44900.1 [Arabidopsis
thaliana] gi|7486948|pir||T00403 hypothetical protein
At2g44900 [imported] - Arabidopsis thaliana
gi|2344894|gb|AAC31834.1| F-box protein family, AtFBX5
[Arabidopsis thaliana]
Length = 930
Score = 31.2 bits (69), Expect = 7.7
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 220 SNNADWNILSD-WISL----GINTGSTNTILIKLISPTPVFNFPTADS*NKILIATNCHL 384
++N W+I S+ W L G++ T+ I PT V F T+ K+L A NCH+
Sbjct: 244 TSNIKWSIASNNWDKLPKLTGLDVSRTD------IGPTAVSRFLTSSQSLKVLCALNCHV 297
Query: 385 HD*DQN 402
+ D++
Sbjct: 298 LEEDES 303
>gb|AAG10053.2|AF288747_1 putative lactate dehydrogenase [Hypotrichomonas acosta]
Length = 318
Score = 31.2 bits (69), Expect = 7.7
Identities = 20/48 (41%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Frame = +1
Query: 247 SDWISLGINTGSTNTILIKLISPTPVFNFP-TADS*NKILIATNCHLH 387
+DWISLGI N+ IK P +F+FP T D K+ I N L+
Sbjct: 244 NDWISLGIPVPEGNSYGIK---PGIIFSFPCTVDEKGKVHIVENLELN 288
>gb|AAK51810.1| maturase K [Gaultheria foliolosa]
Length = 506
Score = 31.2 bits (69), Expect = 7.7
Identities = 21/92 (22%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = -3
Query: 275 VFIPRLIQSDRMFQSALLLMMPSIVLFPELQCLVYKPIFKALVLVFHALIWIVGINSIDF 96
+F+P QS + + + I+ + +++ ++ FKA++ VF ++ + +
Sbjct: 225 IFVPLRNQSSHLCSISFETFLERILSYKKIELEIFVKDFKAIIWVFKDPF----LHYVRY 280
Query: 95 KG-NIVCSLVLSISVKFSRFYVVNFILCECFF 3
+G +I+ S S+ + ++Y+VNF EC+F
Sbjct: 281 RGKSILASKGSSLLMNKWKYYLVNF--WECYF 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,087,113
Number of Sequences: 1393205
Number of extensions: 7500645
Number of successful extensions: 19803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19754
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
