Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006097A_C01 KMC006097A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_161539.1| hypothetical protein XP_161539 [Mus musculus] 34 1.1
ref|ZP_00031906.1| hypothetical protein [Burkholderia fungorum] 32 3.1
ref|NP_627961.1| putative secreted penicillin binding protein [S... 31 8.9
>ref|XP_161539.1| hypothetical protein XP_161539 [Mus musculus]
Length = 148
Score = 33.9 bits (76), Expect = 1.1
Identities = 18/49 (36%), Positives = 27/49 (54%)
Frame = +2
Query: 203 FIGLETSQCMLQILTEGEAKITYQ*KCYIPPLKRMLLMLATEGTHVVPG 349
F+G ++ LQ+L GE + T + Y P L+ L L T GT ++PG
Sbjct: 82 FLGNQSPAQKLQVLEVGEKECTEHTQTYSPTLRLRLGSLLTAGTELLPG 130
>ref|ZP_00031906.1| hypothetical protein [Burkholderia fungorum]
Length = 406
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 141 GMAFKHISNDVGLTSQLMDLAS*V*KLVNACYKY 242
GM H N GLTSQ + A + K+VNA Y+Y
Sbjct: 267 GMTDTHFENPTGLTSQNVSSARDLVKMVNAAYQY 300
>ref|NP_627961.1| putative secreted penicillin binding protein [Streptomyces
coelicolor A3(2)] gi|10432475|emb|CAC10309.1| putative
secreted penicillin binding protein [Streptomyces
coelicolor A3(2)]
Length = 546
Score = 30.8 bits (68), Expect = 8.9
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Frame = -2
Query: 462 VGKKVRRNAKLNAIESENEYVEGQNGSNAS---RRSSSTIAPGTTWVPSVANMSNILFKG 292
+GK +NA L A+ +N V S +S R +S T APG+TW + S +L K
Sbjct: 262 LGKADGKNASLVALRVDNGEVLALANSPSSGFNRAASGTYAPGSTW--KIVTSSALLLKD 319
Query: 291 GI 286
+
Sbjct: 320 AV 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,998,765
Number of Sequences: 1393205
Number of extensions: 7785835
Number of successful extensions: 15633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15632
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
