Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006089A_C01 KMC006089A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O01811|YIQ3_CAEEL Hypothetical 43.1 kDa protein W02D3.3 in ch... 33 2.3
ref|NP_491925.2| Paraoxonase/arylesterase 2-like protein MEC-6, ... 33 2.3
emb|CAA64240.1| N2670 [Saccharomyces cerevisiae] 32 3.0
ref|NP_014356.1| bypass of PAM1; Bop3p [Saccharomyces cerevisiae... 32 3.0
emb|CAA73322.1| ADH-regulated urea transporter [Rana esculenta] 31 6.6
>sp|O01811|YIQ3_CAEEL Hypothetical 43.1 kDa protein W02D3.3 in chromosome I
gi|7508826|pir||T15204 hypothetical protein W02D3.3 -
Caenorhabditis elegans
Length = 382
Score = 32.7 bits (73), Expect = 2.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 351 YTRSTGFTL*LVQNSSPNHQNIHFLRIPSSIKI 449
Y+ S G L V N+ PNHQ IHF +I S K+
Sbjct: 131 YSSSNGRVLLYVINAHPNHQCIHFFQIVESSKL 163
>ref|NP_491925.2| Paraoxonase/arylesterase 2-like protein MEC-6, MEChanosensory
protein, interacts with degenerin channel proteins and
stabilizes the channel (42.5 kD) (mec-6) [Caenorhabditis
elegans] gi|19070139|gb|AAL83724.1|AF295927_1
paraoxonase-like protein MEC-6 [Caenorhabditis elegans]
gi|21328383|gb|AAK21482.2| Hypothetical protein W02D3.3
[Caenorhabditis elegans]
Length = 377
Score = 32.7 bits (73), Expect = 2.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 351 YTRSTGFTL*LVQNSSPNHQNIHFLRIPSSIKI 449
Y+ S G L V N+ PNHQ IHF +I S K+
Sbjct: 131 YSSSNGRVLLYVINAHPNHQCIHFFQIVESSKL 163
>emb|CAA64240.1| N2670 [Saccharomyces cerevisiae]
Length = 345
Score = 32.3 bits (72), Expect = 3.0
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +2
Query: 401 QPPKYPLPENPK*HQDLHTHKVH 469
QP PLP P+ QDLHTH +H
Sbjct: 258 QPLSQPLPPPPQQQQDLHTHNLH 280
>ref|NP_014356.1| bypass of PAM1; Bop3p [Saccharomyces cerevisiae]
gi|1730726|sp|P53958|YNE2_YEAST HYPOTHETICAL 43.7 KD
PROTEIN IN YIP3-TFC5 INTERGENIC REGION
gi|2131874|pir||S62964 hypothetical protein YNL042w -
yeast (Saccharomyces cerevisiae)
gi|1301896|emb|CAA95909.1| ORF YNL042w [Saccharomyces
cerevisiae]
Length = 396
Score = 32.3 bits (72), Expect = 3.0
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +2
Query: 401 QPPKYPLPENPK*HQDLHTHKVH 469
QP PLP P+ QDLHTH +H
Sbjct: 258 QPLSQPLPPPPQQQQDLHTHNLH 280
>emb|CAA73322.1| ADH-regulated urea transporter [Rana esculenta]
Length = 387
Score = 31.2 bits (69), Expect = 6.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -3
Query: 125 YGWILFVLAVTSVTCNVNSTSFG 57
YGW+LF +AV S+TC + S++ G
Sbjct: 143 YGWLLFPVAVMSMTCPLLSSALG 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,114,529
Number of Sequences: 1393205
Number of extensions: 9042102
Number of successful extensions: 18417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18414
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
