Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006080A_C01 KMC006080A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thal... 45 7e-04
ref|NP_187802.1| hypothetical protein; protein id: At3g11960.1 [... 45 7e-04
gb|EAA13982.1| agCP8181 [Anopheles gambiae str. PEST] 32 6.2
gb|EAA14096.1| agCP8157 [Anopheles gambiae str. PEST] 32 6.2
gb|EAA13995.1| agCP8194 [Anopheles gambiae str. PEST] 32 6.2
>gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thaliana]
gi|10998135|dbj|BAB03106.1| gene_id:MEC18.7~unknown
protein [Arabidopsis thaliana]
Length = 1331
Score = 45.1 bits (105), Expect = 7e-04
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = -2
Query: 598 FLELTSMQQNTILSSELPDKP--KPSLKPLLPPHVSVNRVVQLLERVHYALN 449
FLELT+ QQ ++LS+ P K S K P + +++VVQLLERVHYAL+
Sbjct: 1280 FLELTNRQQESVLSTPQPSPSTSKASSKQRSFPPLMLHQVVQLLERVHYALH 1331
>ref|NP_187802.1| hypothetical protein; protein id: At3g11960.1 [Arabidopsis thaliana]
Length = 1329
Score = 45.1 bits (105), Expect = 7e-04
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = -2
Query: 598 FLELTSMQQNTILSSELPDKP--KPSLKPLLPPHVSVNRVVQLLERVHYALN 449
FLELT+ QQ ++LS+ P K S K P + +++VVQLLERVHYAL+
Sbjct: 1278 FLELTNRQQESVLSTPQPSPSTSKASSKQRSFPPLMLHQVVQLLERVHYALH 1329
>gb|EAA13982.1| agCP8181 [Anopheles gambiae str. PEST]
Length = 124
Score = 32.0 bits (71), Expect = 6.2
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 322 DDHRSMFHIRKHIQRQATIHGQYSAFQVLWLKKDVL----GKNGVFSSVHNELVQEVEPP 489
DDH H +K ++ + G+Y K+ V GK+G + VH E ++ + P
Sbjct: 52 DDHTGDVHGQKEARKDDSTQGEYYLIDADGHKRTVTYHVEGKSGFIAEVHREPIKGYQAP 111
Query: 490 D*QKH 504
Q H
Sbjct: 112 QPQHH 116
>gb|EAA14096.1| agCP8157 [Anopheles gambiae str. PEST]
Length = 124
Score = 32.0 bits (71), Expect = 6.2
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 322 DDHRSMFHIRKHIQRQATIHGQYSAFQVLWLKKDVL----GKNGVFSSVHNELVQEVEPP 489
DDH H +K ++ + G+Y K+ V GK+G + VH E ++ + P
Sbjct: 52 DDHTGDVHGQKEARKDDSTQGEYYLIDADGHKRTVTYHVEGKSGFIAEVHREPIKGYQAP 111
Query: 490 D*QKH 504
Q H
Sbjct: 112 QPQHH 116
>gb|EAA13995.1| agCP8194 [Anopheles gambiae str. PEST]
Length = 132
Score = 32.0 bits (71), Expect = 6.2
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 322 DDHRSMFHIRKHIQRQATIHGQYSAFQVLWLKKDVL----GKNGVFSSVHNELVQEVEPP 489
DDH H +K ++ + G+Y K+ V GK+G + VH E ++ + P
Sbjct: 52 DDHTGDVHGQKEARKDDSTQGEYYLIDADGHKRTVTYHVEGKSGFIAEVHREPIKGYQAP 111
Query: 490 D*QKH 504
Q H
Sbjct: 112 QPQHH 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,655,662
Number of Sequences: 1393205
Number of extensions: 11683791
Number of successful extensions: 28831
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28823
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
