Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006055A_C01 KMC006055A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195281.1| hypothetical protein; protein id: At4g35560.1 [... 110 1e-23
gb|AAF40121.1|AF181075_1 USPA2H [Moraxella catarrhalis] 35 0.42
ref|NP_472958.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.71
gb|AAN84896.1|AF352399_1 UspA2 [Moraxella catarrhalis] 35 0.71
gb|AAO22466.1| pol protein [Simian immunodeficiency virus] 34 0.93
>ref|NP_195281.1| hypothetical protein; protein id: At4g35560.1 [Arabidopsis thaliana]
gi|7452454|pir||T04661 hypothetical protein F8D20.70 -
Arabidopsis thaliana gi|3367574|emb|CAA20026.1|
hypothetical protein [Arabidopsis thaliana]
gi|7270507|emb|CAB80272.1| hypothetical protein
[Arabidopsis thaliana]
Length = 917
Score = 110 bits (275), Expect = 1e-23
Identities = 58/116 (50%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Frame = -1
Query: 529 LGGLNKKKLAGKFQALKGKFKEMKGNIQKTA--GKEEPQDEQAGSVDEIKKKYGFSSSSN 356
L GL+K+K+A +F KGK K+M +K+ E+ +++ +VD+IKKKYGF+SS +
Sbjct: 803 LSGLSKQKMANRFSNFKGKLKQMAAKNEKSVVTNDEKHEEKNGATVDQIKKKYGFTSS-D 861
Query: 355 ETSAAKLAESKLQENLQKLQGINLRTTEMQDKAKSFSSLANQVLRTAEHQQDRRSS 188
E AAK+A+SKLQ+NL+KLQGI+LRTTEM+D AKSFSS A ++L E + S
Sbjct: 862 EMGAAKMAQSKLQDNLKKLQGISLRTTEMEDTAKSFSSTAKELLNAVEFNKQSSKS 917
>gb|AAF40121.1|AF181075_1 USPA2H [Moraxella catarrhalis]
Length = 889
Score = 35.4 bits (80), Expect = 0.42
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Frame = -1
Query: 505 LAGKFQALKGKFKEMKGNIQKTAGKEEPQDE----QAGSVDEIKKKYGFSSSSNETSAA- 341
L+G+ K + + NIQ A E QD+ Q ++D + K ++ + E AA
Sbjct: 578 LSGRLIDQKADIAQNQANIQDLAAYNELQDQYAQKQTEAIDALNKASSENTQNIEDLAAY 637
Query: 340 -KLAESKLQENLQKLQGINLRTTE-MQDKAKSFSSLANQVLRTAE--HQQDRRSS 188
+L ++ ++ + + +N ++E Q+ AK+ + +AN + E QQD+ SS
Sbjct: 638 NELQDAYAKQQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSS 692
>ref|NP_472958.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494280|pir||C71622 hypothetical protein PFB0145c -
malaria parasite (Plasmodium falciparum)
gi|3845107|gb|AAC71819.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1979
Score = 34.7 bits (78), Expect = 0.71
Identities = 24/100 (24%), Positives = 48/100 (48%)
Frame = -1
Query: 520 LNKKKLAGKFQALKGKFKEMKGNIQKTAGKEEPQDEQAGSVDEIKKKYGFSSSSNETSAA 341
L K+ + K++ +K K+ E + + DE+ DEI KKYG + N T+
Sbjct: 1320 LTYKETSLKYEQIKVKYDEKCSQYDEIRFQ---YDEKCFQYDEINKKYGALLNINITN-- 1374
Query: 340 KLAESKLQENLQKLQGINLRTTEMQDKAKSFSSLANQVLR 221
K+ +SK+ N ++ ++ + + + K L +++R
Sbjct: 1375 KMVDSKVDRNNNEIISVDNKVEGIANYLKQIFELNEEIIR 1414
>gb|AAN84896.1|AF352399_1 UspA2 [Moraxella catarrhalis]
Length = 668
Score = 34.7 bits (78), Expect = 0.71
Identities = 30/116 (25%), Positives = 57/116 (48%), Gaps = 9/116 (7%)
Frame = -1
Query: 508 KLAGKFQALKGKFKEMKGNIQKTAGKEEPQDE----QAGSVDEIKKKYGFSSSSNETSAA 341
+L+G K + + NIQ A E QD+ Q ++D + K ++ + E AA
Sbjct: 356 ELSGHLIDQKADIAQNQANIQDLAAYNELQDQYAQKQTEAIDALNKASSENTQNIEDLAA 415
Query: 340 --KLAESKLQENLQKLQGINLRTTE-MQDKAKSFSSLANQVLRTAE--HQQDRRSS 188
+L ++ ++ + + +N ++E Q+ AK+ + +AN + E QQD+ SS
Sbjct: 416 YNELQDAYAKQQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSS 471
>gb|AAO22466.1| pol protein [Simian immunodeficiency virus]
Length = 1012
Score = 34.3 bits (77), Expect = 0.93
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = -1
Query: 499 GKFQALKGKFKEMKGNIQKTAGKEEPQDEQAGSVDEIKKKYGFSSSSN-----ETSAAKL 335
G +++ + K++ G I+ A K E + A + K+K G S + A+ L
Sbjct: 878 GVVESMNNQLKKIIGQIRDQAEKLETAVQMAVLIHNFKRKGGIGEYSAAERIVDIIASDL 937
Query: 334 AESKLQENLQKLQGINLRTTEMQDK 260
SKLQ+N+ K+Q + E +D+
Sbjct: 938 LTSKLQQNILKIQNFRVYYREGRDQ 962
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,659,307
Number of Sequences: 1393205
Number of extensions: 8749582
Number of successful extensions: 30117
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 28753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30049
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
