Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006025A_C01 KMC006025A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181798.1| unknown protein; protein id: At2g42700.1 [Arabi... 235 3e-61
gb|AAH21137.1|AAH21137 Unknown (protein for IMAGE:4866354) [Homo... 43 0.003
gb|AAH32453.1| LOC152579 [Homo sapiens] 43 0.003
gb|AAH12458.1|AAH12458 Unknown (protein for IMAGE:3860908) [Homo... 43 0.003
dbj|BAC40298.1| unnamed protein product [Mus musculus] 43 0.003
>ref|NP_181798.1| unknown protein; protein id: At2g42700.1 [Arabidopsis thaliana]
gi|25370821|pir||B84857 hypothetical protein At2g42700
[imported] - Arabidopsis thaliana
gi|4512682|gb|AAD21736.1| unknown protein [Arabidopsis
thaliana] gi|20198081|gb|AAM15390.1| unknown protein
[Arabidopsis thaliana]
Length = 788
Score = 235 bits (600), Expect = 3e-61
Identities = 115/159 (72%), Positives = 137/159 (85%)
Frame = -2
Query: 639 FGDMQLKLELRDRVDNFFKFLHKLSDLKRRNLPLRDGSLSVESNFDEDTYVGKGLVYKLL 460
+ DMQLKL+LRDRVD+ F+FLHKLS L+ RNLPLR+GSL+ ES+F + KGLVY+L+
Sbjct: 630 YDDMQLKLDLRDRVDSLFRFLHKLSSLRTRNLPLREGSLASESSFPGEPSGNKGLVYRLI 689
Query: 459 TRVLGKYDVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADPNVILVFVIGGINGLEVRE 280
T+VL K ++PGLEYHSSTVGR KSGFGRFGLGQAKPSLAD +VILVFVIGGING+EV E
Sbjct: 690 TKVLSKQEIPGLEYHSSTVGRFIKSGFGRFGLGQAKPSLADQSVILVFVIGGINGIEVLE 749
Query: 279 AQEALAESGRPDIELLVGGTTLLTPGDMLDLLLGDLSYF 163
AQEA++ESGRPDI L++GGTTLLTP DM +LLLG S+F
Sbjct: 750 AQEAVSESGRPDINLVIGGTTLLTPDDMFELLLGQFSHF 788
>gb|AAH21137.1|AAH21137 Unknown (protein for IMAGE:4866354) [Homo sapiens]
Length = 714
Score = 43.1 bits (100), Expect = 0.003
Identities = 27/85 (31%), Positives = 52/85 (60%)
Frame = -2
Query: 438 DVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADPNVILVFVIGGINGLEVREAQEALAE 259
D +E+ SS + L K+GF F + ++P +D ++++FV+GG+ EV+ ++ +A
Sbjct: 620 DSVDIEHMSSGLTDLLKTGFSMF-MKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVA- 677
Query: 258 SGRPDIELLVGGTTLLTPGDMLDLL 184
S +P +++V T LL P ++ +LL
Sbjct: 678 SLKPGTQVIVLSTRLLKPLNIPELL 702
>gb|AAH32453.1| LOC152579 [Homo sapiens]
Length = 684
Score = 43.1 bits (100), Expect = 0.003
Identities = 27/85 (31%), Positives = 52/85 (60%)
Frame = -2
Query: 438 DVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADPNVILVFVIGGINGLEVREAQEALAE 259
D +E+ SS + L K+GF F + ++P +D ++++FV+GG+ EV+ ++ +A
Sbjct: 590 DSVDIEHMSSGLTDLLKTGFSMF-MKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVA- 647
Query: 258 SGRPDIELLVGGTTLLTPGDMLDLL 184
S +P +++V T LL P ++ +LL
Sbjct: 648 SLKPGTQVIVLSTRLLKPLNIPELL 672
>gb|AAH12458.1|AAH12458 Unknown (protein for IMAGE:3860908) [Homo sapiens]
Length = 650
Score = 43.1 bits (100), Expect = 0.003
Identities = 27/85 (31%), Positives = 52/85 (60%)
Frame = -2
Query: 438 DVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADPNVILVFVIGGINGLEVREAQEALAE 259
D +E+ SS + L K+GF F + ++P +D ++++FV+GG+ EV+ ++ +A
Sbjct: 556 DSVDIEHMSSGLTDLLKTGFSMF-MKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVA- 613
Query: 258 SGRPDIELLVGGTTLLTPGDMLDLL 184
S +P +++V T LL P ++ +LL
Sbjct: 614 SLKPGTQVIVLSTRLLKPLNIPELL 638
>dbj|BAC40298.1| unnamed protein product [Mus musculus]
Length = 684
Score = 43.1 bits (100), Expect = 0.003
Identities = 27/87 (31%), Positives = 52/87 (59%)
Frame = -2
Query: 444 KYDVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADPNVILVFVIGGINGLEVREAQEAL 265
K D +E+ SS + L K+GF F + ++P +D ++++FV+GG+ E + ++ +
Sbjct: 588 KSDPIDIEHMSSGLTDLLKTGFSMF-MKVSRPHPSDHPLLILFVVGGVTVAEAKMVKDLV 646
Query: 264 AESGRPDIELLVGGTTLLTPGDMLDLL 184
A S +P +++V T LL P ++ +LL
Sbjct: 647 A-SLKPGTQVMVLSTRLLKPLNIPELL 672
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,925,716
Number of Sequences: 1393205
Number of extensions: 13019441
Number of successful extensions: 31630
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 30423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31546
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
