Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006021A_C01 KMC006021A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01037 hypothetical protein YUP8H12R.20 - Arabidopsis thali... 164 1e-39
ref|NP_178040.1| unknown protein; protein id: At1g79190.1 [Arabi... 164 1e-39
gb|AAO42297.1| unknown protein [Arabidopsis thaliana] 164 1e-39
gb|AAL67598.1|AC018929_20 hypothetical protein [Oryza sativa] 144 1e-33
ref|XP_130663.1| RIKEN cDNA 2610036D13 [Mus musculus] 38 0.10
>pir||T01037 hypothetical protein YUP8H12R.20 - Arabidopsis thaliana
gi|3152582|gb|AAC17063.1| YUP8H12R.20 [Arabidopsis
thaliana]
Length = 1325
Score = 164 bits (415), Expect = 1e-39
Identities = 82/143 (57%), Positives = 111/143 (77%), Gaps = 3/143 (2%)
Frame = -2
Query: 648 SLAETSYLKVQIAVLNMVADLCRNKRSTSALELVLKKVSGLVVGIACSSVVGLRDASLNA 469
++AE S LKVQ AVL+M+A++ R KRS SAL+ VLKKV+GLVVGIA SSV GLR+A+LNA
Sbjct: 1011 TIAEVSSLKVQAAVLDMIAEISRGKRSASALDAVLKKVAGLVVGIAYSSVTGLREAALNA 1070
Query: 468 LHGLASIDADLVWLLLADIYFTVKKTETSPPPRPDLPDISEILPF---PSSPKEHLYLQY 298
L GLA ID DL+W+LLAD+Y+++KK + PP P+ PDIS +LP S + LY++Y
Sbjct: 1071 LRGLACIDPDLIWILLADVYYSLKKKDLPLPPSPEFPDISNVLPSRPPEDSRTKFLYVEY 1130
Query: 297 GGQSHGFDIDMASVEFVFTKVNS 229
GG+S+GF+++ +SVE VF K+ S
Sbjct: 1131 GGRSYGFELEFSSVEIVFKKMQS 1153
>ref|NP_178040.1| unknown protein; protein id: At1g79190.1 [Arabidopsis thaliana]
Length = 1280
Score = 164 bits (415), Expect = 1e-39
Identities = 82/143 (57%), Positives = 111/143 (77%), Gaps = 3/143 (2%)
Frame = -2
Query: 648 SLAETSYLKVQIAVLNMVADLCRNKRSTSALELVLKKVSGLVVGIACSSVVGLRDASLNA 469
++AE S LKVQ AVL+M+A++ R KRS SAL+ VLKKV+GLVVGIA SSV GLR+A+LNA
Sbjct: 1129 TIAEVSSLKVQAAVLDMIAEISRGKRSASALDAVLKKVAGLVVGIAYSSVTGLREAALNA 1188
Query: 468 LHGLASIDADLVWLLLADIYFTVKKTETSPPPRPDLPDISEILPF---PSSPKEHLYLQY 298
L GLA ID DL+W+LLAD+Y+++KK + PP P+ PDIS +LP S + LY++Y
Sbjct: 1189 LRGLACIDPDLIWILLADVYYSLKKKDLPLPPSPEFPDISNVLPSRPPEDSRTKFLYVEY 1248
Query: 297 GGQSHGFDIDMASVEFVFTKVNS 229
GG+S+GF+++ +SVE VF K+ S
Sbjct: 1249 GGRSYGFELEFSSVEIVFKKMQS 1271
>gb|AAO42297.1| unknown protein [Arabidopsis thaliana]
Length = 1093
Score = 164 bits (415), Expect = 1e-39
Identities = 82/143 (57%), Positives = 111/143 (77%), Gaps = 3/143 (2%)
Frame = -2
Query: 648 SLAETSYLKVQIAVLNMVADLCRNKRSTSALELVLKKVSGLVVGIACSSVVGLRDASLNA 469
++AE S LKVQ AVL+M+A++ R KRS SAL+ VLKKV+GLVVGIA SSV GLR+A+LNA
Sbjct: 942 TIAEVSSLKVQAAVLDMIAEISRGKRSASALDAVLKKVAGLVVGIAYSSVTGLREAALNA 1001
Query: 468 LHGLASIDADLVWLLLADIYFTVKKTETSPPPRPDLPDISEILPF---PSSPKEHLYLQY 298
L GLA ID DL+W+LLAD+Y+++KK + PP P+ PDIS +LP S + LY++Y
Sbjct: 1002 LRGLACIDPDLIWILLADVYYSLKKKDLPLPPSPEFPDISNVLPSRPPEDSRTKFLYVEY 1061
Query: 297 GGQSHGFDIDMASVEFVFTKVNS 229
GG+S+GF+++ +SVE VF K+ S
Sbjct: 1062 GGRSYGFELEFSSVEIVFKKMQS 1084
>gb|AAL67598.1|AC018929_20 hypothetical protein [Oryza sativa]
Length = 1332
Score = 144 bits (363), Expect = 1e-33
Identities = 72/137 (52%), Positives = 104/137 (75%)
Frame = -2
Query: 654 EDSLAETSYLKVQIAVLNMVADLCRNKRSTSALELVLKKVSGLVVGIACSSVVGLRDASL 475
E+ +AE S K+QIAVL+M+A++ NKRS AL VLKKV GLVVGIA S ++GLR+A++
Sbjct: 1187 EEPMAEISSQKIQIAVLDMLAEISSNKRSAIALGSVLKKVCGLVVGIAYSGLIGLREAAI 1246
Query: 474 NALHGLASIDADLVWLLLADIYFTVKKTETSPPPRPDLPDISEILPFPSSPKEHLYLQYG 295
AL G+ASID+DLVWLL+AD+Y+++ + + PP+ DL ++S++LP P S +E+L++ YG
Sbjct: 1247 RALTGIASIDSDLVWLLMADVYYSLNQRDIPLPPKQDLVELSDLLPPPMSSREYLFVLYG 1306
Query: 294 GQSHGFDIDMASVEFVF 244
G+ DID +SV VF
Sbjct: 1307 GEGVRCDIDPSSVREVF 1323
>ref|XP_130663.1| RIKEN cDNA 2610036D13 [Mus musculus]
Length = 1085
Score = 38.1 bits (87), Expect = 0.10
Identities = 29/91 (31%), Positives = 47/91 (50%), Gaps = 1/91 (1%)
Frame = -2
Query: 642 AETSYLKVQIAVLNMVADLCRNKRSTSALELVLKKVS-GLVVGIACSSVVGLRDASLNAL 466
+ T K+Q+AVL + LC N E L KV+ V+ ++ V L++A+ +
Sbjct: 970 SHTLAFKLQLAVLQGLGPLCEN---LDLGEGDLNKVADACVIYLSTKQPVKLQEAARSVF 1026
Query: 465 HGLASIDADLVWLLLADIYFTVKKTETSPPP 373
L +D D WLLL ++Y V++ T+P P
Sbjct: 1027 LHLMRVDPDSTWLLLHELYCPVQQF-TAPHP 1056
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,437,249
Number of Sequences: 1393205
Number of extensions: 11851251
Number of successful extensions: 31812
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 30193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31758
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
