Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006009A_C01 KMC006009A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 35 0.55
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 35 0.55
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 35 0.55
pir||T31353 polyprotein - Arabidopsis arenosa Evelknievel retrot... 32 2.7
ref|NP_681902.1| ORF_ID:tll1111~similar to biotin acetyl-CoA-car... 32 4.7
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Frame = +3
Query: 195 ITLFSNLRDSSY*CSHPAR-LLHPMAQIIVKPASFKASTPSPSVIPPSSFPLAEDTK 362
+ L +L S+Y C A ++ + +SF ST SPSV PPS PL++DT+
Sbjct: 717 VLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTR 773
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Frame = +3
Query: 195 ITLFSNLRDSSY*CSHPAR-LLHPMAQIIVKPASFKASTPSPSVIPPSSFPLAEDTK 362
+ L +L S+Y C A ++ + +SF ST SPSV PPS PL++DT+
Sbjct: 717 VLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTR 773
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 34.7 bits (78), Expect = 0.55
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Frame = +3
Query: 195 ITLFSNLRDSSY*CSHPAR-LLHPMAQIIVKPASFKASTPSPSVIPPSSFPLAEDTK 362
+ L +L S+Y C A ++ + +SF ST SPSV PPS PL++DT+
Sbjct: 717 VLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTR 773
>pir||T31353 polyprotein - Arabidopsis arenosa Evelknievel retrotransposon
(fragment) gi|2865437|gb|AAC02672.1| polyprotein
[Arabidopsis arenosa]
Length = 1390
Score = 32.3 bits (72), Expect = 2.7
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 195 ITLFSNLRDSSY*CSHPAR-LLHPMAQIIVKPASFKASTPSPSVIPPSSFPLAEDTK 362
+ L +L S+Y C A ++ + + F ST SPSV PPS PL++DT+
Sbjct: 717 VLLGYSLSQSAYLCLDRATGRVYTSRHVQFAESIFPFSTTSPSVTPPSDPPLSQDTR 773
>ref|NP_681902.1| ORF_ID:tll1111~similar to biotin acetyl-CoA-carboxylase synthetase
[Thermosynechococcus elongatus BP-1]
gi|22294835|dbj|BAC08664.1| ORF_ID:tll1111~similar to
biotin acetyl-CoA-carboxylase synthetase
[Thermosynechococcus elongatus BP-1]
Length = 234
Score = 31.6 bits (70), Expect = 4.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 283 NRPLLKPQHLLQV*FPLPPSPWQKTPKLRAAISLMKLIS 399
NRP PQ +L F LP SP P ++A I++M+ +S
Sbjct: 45 NRPWQSPQGVLTASFILPYSPAIVAPSIQAGIAVMRALS 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,061,520
Number of Sequences: 1393205
Number of extensions: 8389636
Number of successful extensions: 19505
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19494
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
