Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006008A_C01 KMC006008A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565214.1| expressed protein; protein id: At1g79600.1, sup... 87 9e-17
gb|AAK63973.1| At1g79600/F20B17_3 [Arabidopsis thaliana] 87 9e-17
ref|ZP_00073834.1| hypothetical protein [Trichodesmium erythraeu... 50 2e-05
ref|NP_681740.1| ORF_ID:tll0950~hypothetical protein [Thermosyne... 42 0.003
ref|NP_442136.1| ABC1-like [Synechocystis sp. PCC 6803] gi|30248... 40 0.017
>ref|NP_565214.1| expressed protein; protein id: At1g79600.1, supported by cDNA:
gi_14532489, supported by cDNA: gi_18086324 [Arabidopsis
thaliana] gi|7715610|gb|AAF68128.1|AC010793_23 F20B17.3
[Arabidopsis thaliana] gi|18086325|gb|AAL57626.1|
At1g79600/F20B17_3 [Arabidopsis thaliana]
gi|22655328|gb|AAM98256.1| At1g79600/F20B17_3
[Arabidopsis thaliana]
Length = 711
Score = 87.4 bits (215), Expect = 9e-17
Identities = 45/61 (73%), Positives = 51/61 (82%)
Frame = -1
Query: 526 RVWGLLQSSNDFDPSLLLPILQVIQQQPEARRLGGRVVGGVTQRLAARFLLQVLRAPPTA 347
R+WGLLQSS FDP++L PILQV+QQ PEARRLGGRV GGV QRLAARFL Q+LRA +
Sbjct: 648 RIWGLLQSSESFDPAILQPILQVLQQ-PEARRLGGRVAGGVGQRLAARFLQQLLRATTPS 706
Query: 346 S 344
S
Sbjct: 707 S 707
>gb|AAK63973.1| At1g79600/F20B17_3 [Arabidopsis thaliana]
Length = 569
Score = 87.4 bits (215), Expect = 9e-17
Identities = 45/61 (73%), Positives = 51/61 (82%)
Frame = -1
Query: 526 RVWGLLQSSNDFDPSLLLPILQVIQQQPEARRLGGRVVGGVTQRLAARFLLQVLRAPPTA 347
R+WGLLQSS FDP++L PILQV+QQ PEARRLGGRV GGV QRLAARFL Q+LRA +
Sbjct: 506 RIWGLLQSSESFDPAILQPILQVLQQ-PEARRLGGRVAGGVGQRLAARFLQQLLRATTPS 564
Query: 346 S 344
S
Sbjct: 565 S 565
>ref|ZP_00073834.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 684
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = -1
Query: 523 VWGLLQSSNDFDPSLLLPILQVIQQQPEARRLGGRVVGGVTQRLAARFLLQVLRAPPTAS 344
+W ++Q + FD L+ ++ I +PE +R+G +V GG+TQR AR + Q+L +P
Sbjct: 604 IWKIIQDTPGFDAMELVQLIPNILGKPEMQRMGQQVAGGLTQRALARLIRQLLLSPEHPD 663
Query: 343 T*VSSH 326
T +SH
Sbjct: 664 TDGNSH 669
>ref|NP_681740.1| ORF_ID:tll0950~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294673|dbj|BAC08502.1|
ORF_ID:tll0950~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 648
Score = 42.4 bits (98), Expect = 0.003
Identities = 19/56 (33%), Positives = 36/56 (63%)
Frame = -1
Query: 526 RVWGLLQSSNDFDPSLLLPILQVIQQQPEARRLGGRVVGGVTQRLAARFLLQVLRA 359
R++ +LQ + FD ++P + + +PE +++G R+V G+ QR ARF+ ++L A
Sbjct: 580 RIFSILQDTPGFDWGKVIPAIVRMIARPEVQQMGQRIVNGLLQRAIARFIREMLLA 635
>ref|NP_442136.1| ABC1-like [Synechocystis sp. PCC 6803]
gi|3024871|sp|Q55680|Y005_SYNY3 Hypothetical protein
sll0005 gi|7469256|pir||S76354 ABC1-type transport
protein sll0005 - Synechocystis sp. (strain PCC 6803)
gi|1001579|dbj|BAA10206.1| ABC1-like [Synechocystis sp.
PCC 6803]
Length = 681
Score = 40.0 bits (92), Expect = 0.017
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -1
Query: 523 VWGLLQSSNDFDPSLLLPILQVIQQQPEARRLGGRVVGGVTQRLAARFLLQ 371
+W +L+ + FDP +P+L I P +RR+G +V G+ Q+ AR + Q
Sbjct: 612 LWQILKETPGFDPLKFVPVLSQIIVNPTSRRMGQQVAEGLLQKAIARVIRQ 662
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,699,255
Number of Sequences: 1393205
Number of extensions: 9325474
Number of successful extensions: 26603
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 25330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26530
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
