Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC006003A_C01 KMC006003A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD28376.1| unknown [Leishmania major] 33 2.2
gb|EAA17458.1| putative splicing factor [Plasmodium yoelii yoelii] 33 2.2
ref|NP_700646.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.9
sp|P07038|PMA1_NEUCR Plasma membrane ATPase (Proton pump) gi|679... 33 2.9
gb|AAA33563.1| plasma membrane H+ ATPase 33 2.9
>gb|AAD28376.1| unknown [Leishmania major]
Length = 136
Score = 33.1 bits (74), Expect = 2.2
Identities = 24/45 (53%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Frame = +1
Query: 43 FFFLFS--LLFLTLSLFCSSPVSVLCFPLPCQNDLPLLVHSFMAP 171
FFFLF LL L+LSL CSS VS+LC L P L SF +P
Sbjct: 69 FFFLFLPLLLSLSLSLPCSSSVSLLCRSLFSSCRCPFL--SFRSP 111
>gb|EAA17458.1| putative splicing factor [Plasmodium yoelii yoelii]
Length = 698
Score = 33.1 bits (74), Expect = 2.2
Identities = 26/107 (24%), Positives = 44/107 (40%), Gaps = 9/107 (8%)
Frame = -2
Query: 311 SEEQSIPSKMK*KFNMETELD*ENHPHFM*EERRESETLDHSMDSDLGA---------MK 159
S E +P K K K +TEL+ + HF E + + + D+D +K
Sbjct: 98 SSEDEVPQKNKNKNKNKTELEENDSKHFS-EHSEQGDQEEEQSDNDENEKRKKEKYKNIK 156
Query: 158 E*TSRGRSF*HGRGKQSTETGEEQNRDRVRKRRENKKKKQHLRKQSK 18
G S R K S ++ R+R R+ + KK + +K+ +
Sbjct: 157 HYNDEGNSN-SNRDKSSDSESDQDERNRKREEKSESYKKDYHKKRRR 202
>ref|NP_700646.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495037|gb|AAN35370.1|AE014831_46 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 439
Score = 32.7 bits (73), Expect = 2.9
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Frame = -3
Query: 346 NLQNLVPETKWCLKN----RAFQVK*SKNSTWKQS*TKKTTPISCKKREENQRP*ITAWI 179
NL NL+ + + C K+ + ++K K KQS K + + +E+ Q
Sbjct: 13 NLVNLIKKMELCQKDLLEYKRMEIKIGKQKEHKQSKEDKQSKEDKQSKEDKQSK------ 66
Query: 178 LI*GP*KNEQAEVDHSDMAGENRAPKQGKNRTETE*EREEKIKKRNNTYENRV 20
+++Q + D E++ KQ K + + ++E+K KK+ ++
Sbjct: 67 ------EDKQNKEDKQKQNEEDKQNKQDKQNKQNKQDKEQKKKKKKEVLHKKI 113
>sp|P07038|PMA1_NEUCR Plasma membrane ATPase (Proton pump) gi|67971|pir||PXNCP
H+-exporting ATPase (EC 3.6.3.6), plasma membrane
[similarity] - Neurospora crassa gi|24159070|pdb|1MHS|A
Chain A, Model Of Neurospora Crassa Proton Atpase
gi|24159071|pdb|1MHS|B Chain B, Model Of Neurospora
Crassa Proton Atpase gi|168761|gb|AAA33561.1| plasma
membrane ATPase [Neurospora crassa]
gi|7800811|emb|CAB91270.1| H+-transporting ATPase
[Neurospora crassa] gi|28917966|gb|EAA27650.1| PLASMA
MEMBRANE ATPASE (PROTON PUMP) [MIPS] [Neurospora crassa]
Length = 920
Score = 32.7 bits (73), Expect = 2.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 205 DSLLSSYMKWGWF--S*SSSVSMLNFYFILLGMLCSSDTIWFLEQGSVGW 348
D L + + WGWF S +S V+++ + G+ C ++++ Q SVG+
Sbjct: 835 DILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSVGF 884
>gb|AAA33563.1| plasma membrane H+ ATPase
Length = 920
Score = 32.7 bits (73), Expect = 2.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 205 DSLLSSYMKWGWF--S*SSSVSMLNFYFILLGMLCSSDTIWFLEQGSVGW 348
D L + + WGWF S +S V+++ + G+ C ++++ Q SVG+
Sbjct: 835 DILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSVGF 884
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,251,988
Number of Sequences: 1393205
Number of extensions: 10570388
Number of successful extensions: 37952
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 33603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37333
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
