Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005985A_C01 KMC005985A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566689.1| putative protein kinase; protein id: At3g21630.... 65 6e-10
dbj|BAB02358.1| contains similarity to receptor protein kinase~g... 65 6e-10
ref|NP_702700.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.38
ref|NP_704462.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.64
pir||G96558 probable protein kinase [imported] - Arabidopsis tha... 33 1.4
>ref|NP_566689.1| putative protein kinase; protein id: At3g21630.1 [Arabidopsis
thaliana]
Length = 537
Score = 64.7 bits (156), Expect = 6e-10
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = -1
Query: 503 KACTQDHPQLRPSMRSIVVALMTLSSTPDDWDVGSFYENPNLVNLMSGR 357
KACTQ++ QLRPSMR IVVAL TL S+ +WDVG+F +N +LV+LMSGR
Sbjct: 490 KACTQENAQLRPSMRYIVVALSTLFSSTGNWDVGNF-QNEDLVSLMSGR 537
>dbj|BAB02358.1| contains similarity to receptor protein kinase~gene_id:MIL23.20
[Arabidopsis thaliana]
Length = 603
Score = 64.7 bits (156), Expect = 6e-10
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = -1
Query: 503 KACTQDHPQLRPSMRSIVVALMTLSSTPDDWDVGSFYENPNLVNLMSGR 357
KACTQ++ QLRPSMR IVVAL TL S+ +WDVG+F +N +LV+LMSGR
Sbjct: 556 KACTQENAQLRPSMRYIVVALSTLFSSTGNWDVGNF-QNEDLVSLMSGR 603
>ref|NP_702700.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498166|emb|CAD49138.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4138
Score = 35.4 bits (80), Expect = 0.38
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +2
Query: 14 SSLSRYNIWNNN------KYAQEASNRVHFTNMTICT*SRNIHISHVSKKKKKK-NKSCI 172
+S + YN++NNN KY F N+T CT + N++++ K NK+ +
Sbjct: 144 NSSNTYNMYNNNNNNNTSKYLDSVEFNNTFNNITTCTKNENVNMNEQDNNVYNKINKNYL 203
Query: 173 MMVNYDKM 196
+++N D++
Sbjct: 204 LLLNNDEL 211
>ref|NP_704462.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499201|emb|CAD51281.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 850
Score = 34.7 bits (78), Expect = 0.64
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +2
Query: 5 SSNSSLSRYNIWNNNKYAQEASNRVHFTNMTICT*SRNIHISHVSKKKKKKNKSCIMM-- 178
SS ++++YN N +Y + + ++ TN I N++ +H KKKKKN + +
Sbjct: 297 SSKENINKYNK-NKEEYYKNLIDSINNTNNPII----NVNNNHYHNKKKKKNYNYYPVNN 351
Query: 179 -VNYDKMVNPSTLGTESGPEICVNIPLLHSFYKHC 280
+NYD + L ++ P +N ++ K+C
Sbjct: 352 NINYDHVETIKILDIDNIPCNILNNLFAYNIVKNC 386
>pir||G96558 probable protein kinase [imported] - Arabidopsis thaliana
gi|9802793|gb|AAF99862.1|AC015448_12 Putative protein
kinase [Arabidopsis thaliana]
Length = 601
Score = 33.5 bits (75), Expect = 1.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 506 AKACTQDHPQLRPSMRSIVVALMTLSSTPDDWDVGSFYENPNLVNLMSGR 357
AK C D P LRP+M+ +V++L + + +W+ + L+ GR
Sbjct: 552 AKQCVDDDPILRPNMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 601
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,852,463
Number of Sequences: 1393205
Number of extensions: 10599306
Number of successful extensions: 30879
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30198
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
